couldn't connect to display error for smallbaselineApp.py batch job from tmux #928
Description
Description of the problem
I am getting this error when submitting a smallbaselineApp,py jobs as SLURM batch job from a tmux shell. I don't get it when running the job on a regular terminal nor when submitting a batch job from terminal. This seem to be related to a recent update as I never saw this before.
Traceback (most recent call last):
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/sources/MintPy/src/mintpy/cli/smallbaselineApp.py", line 213, in <module>
main(sys.argv[1:])
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/sources/MintPy/src/mintpy/cli/smallbaselineApp.py", line 208, in main
run_smallbaselineApp(inps)
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/sources/MintPy/src/mintpy/smallbaselineApp.py", line 1117, in run_smallbaselineApp
app.run(steps=inps.runSteps)
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/sources/MintPy/src/mintpy/smallbaselineApp.py", line 907, in run
self.run_residual_phase_rms(sname)
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/sources/MintPy/src/mintpy/smallbaselineApp.py", line 708, in run_residual_phase_rms
mintpy.cli.timeseries_rms.main(iargs)
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/sources/MintPy/src/mintpy/cli/timeseries_rms.py", line 75, in main
run_timeseries_rms(inps)
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/sources/MintPy/src/mintpy/timeseries_rms.py", line 92, in run_timeseries_rms
pp.plot_timeseries_rms(
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/sources/MintPy/src/mintpy/utils/plot.py", line 1018, in plot_timeseries_rms
fig, ax = plt.subplots(figsize=fig_size)
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/3rdparty/miniconda3/lib/python3.9/site-packages/matplotlib/cbook/deprecation.py", line 451, in wrapper
return func(*args, **kwargs)
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/3rdparty/miniconda3/lib/python3.9/site-packages/matplotlib/pyplot.py", line 1287, in subplots
fig = figure(**fig_kw)
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/3rdparty/miniconda3/lib/python3.9/site-packages/matplotlib/pyplot.py", line 687, in figure
figManager = new_figure_manager(num, figsize=figsize,
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/3rdparty/miniconda3/lib/python3.9/site-packages/matplotlib/pyplot.py", line 315, in new_figure_manager
return _backend_mod.new_figure_manager(*args, **kwargs)
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/3rdparty/miniconda3/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 3494, in new_figure_manager
return cls.new_figure_manager_given_figure(num, fig)
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/3rdparty/miniconda3/lib/python3.9/site-packages/matplotlib/backends/_backend_tk.py", line 885, in new_figure_manager_given_figure
window = tk.Tk(className="matplotlib")
File "/work2/05861/tg851601/stampede2/code/rsmas_insar/3rdparty/miniconda3/lib/python3.9/tkinter/__init__.py", line 2270, in __init__
self.tk = _tkinter.create(screenName, baseName, className, interactive, wantobjects, useTk, sync, use)
_tkinter.TclError: couldn't connect to display "localhost:38.0"
Googling it, I saw to use matplotlib.use('Agg') and/or playing with xhost + but I did not try yet. I am happy to try things if you have ideas.
Full script that generated the error
It happened here:
******************** step - residual_RMS ********************
timeseries_rms.py timeseriesResidual.h5 -t /scratch/05861/tg851601/qMiamiSenAT48/miaplpy/network_single_reference/smallbaselineApp.cfg
read options from template file: smallbaselineApp.cfg
remove quadratic ramp from file: timeseriesResidual.h5
read mask file: maskTempCoh.h5
--------------------------------------------------
grab metadata from ref_file: timeseriesResidual.h5
grab dataset structure from ref_file: timeseriesResidual.h5
create HDF5 file: timeseriesResidual_ramp.h5 with w mode
create dataset : bperp of float32 in size of (11,) with compression = None
create dataset : date of |S8 in size of (11,) with compression = None
create dataset : timeseries of float32 in size of (11, 630, 1297) with compression = None
close HDF5 file: timeseriesResidual_ramp.h5
estimating phase ramp one date at a time ...
[==================================================] 11/11 1s / 0s
finished writing to file: timeseriesResidual_ramp.h5
time used: 00 mins 2.1 secs.
calculating residual RMS for each epoch from file: timeseriesResidual_ramp.h5
read mask from file: maskTempCoh.h5
reading timeseries data from file: timeseriesResidual_ramp.h5 ...
[==================================================] 11/11 0s / 0s
save timeseries RMS to text file: /scratch/05861/tg851601/qMiamiSenAT48/miaplpy/network_single_reference/rms_timeseriesResidual_ramp.txt
read timeseries residual RMS from file: /scratch/05861/tg851601/qMiamiSenAT48/miaplpy/network_single_reference/rms_timeseriesResidual_ramp.txt
--------------------------------------------------
date with min RMS: 20160412 - 71605264.0000
save date to file: reference_date.txt
--------------------------------------------------
date(s) with RMS > 3.0 * median RMS (144891103.5461)
None.
PASTE CODE HERE
Full error message
PASTE ERROR MESSAGE HERE
System information
I on Linux CentOS using the development version.
git log
commit d8b74c67c0bddd9cdc6000b7476a681c74766308
Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon Nov 28 17:11:04 2022 -0800
pre-commit: v4.3.0 → v4.4.0 (#921)
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.3.0 → v4.4.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.3.0...v4.4.0)
commit 9941b20a69bde09b89452dde8085cc108588a4ae
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Nov 28 09:06:45 2022 -0800
build(deps): bump akhilerm/tag-push-action from 2.0.0 to 2.1.0 (#917)
- Operating system:
- Python environment:
- MintPy version:
- Your custom / default template file (if the bug is related to a specific dataset):