This directory contains Jupyter notebooks that can be directly launched on Google Colab.
To run it locally on your system see the instructions below (does require a working python3 (3.9 to 3.13) installation).
| Notebooks | Description | Colab |
|---|---|---|
| HADDOCK3-antibody-antigen.ipynb | antibogy-antigen tutorial (based on our online tutorial) | Launch Colab |
# create a directory
cd $HOME
mkdir haddock3-tutorial
cd haddock3-tutorial
# setup python
python3.13 -m venv .venv
source .venv/bin/activate
# install jupyter
pip install notebook
# download the notebook
wget https://raw.githubusercontent.com/haddocking/haddock3/refs/heads/main/notebooks/HADDOCK3-antibody-antigen.ipynb
# run the jypyter notebook server
jupyter notebookgo to http://localhost:8888/notebooks/HADDOCK3-antibody-antigen.ipynb - click Run All
Free for non-profit, but does require registration with the EGI SSO.
Once logged in and the session is active, start a Jypyter notebook and import the notebook from an URL specifying the same https address as above to the local execution.