Excluding dependencies from included builds doesn't work in Gradle 9.3.0 #36331
Description
Current Behavior
Dependencies to included projects, which uses dependency substitution in the inclusion, can no longer be excluded. See reproducer project.
$ ./gradlew wrapper --gradle-version 9.3.0
BUILD SUCCESSFUL in 766ms
1 actionable task: 1 executed
$ ./gradlew dependencies --configuration=runtimeClasspath
> Task :dependencies
------------------------------------------------------------
Root project 'excluded-dependencies'
------------------------------------------------------------
runtimeClasspath - Runtime classpath of source set 'main'.
\--- org.example:other-dependency -> project :dependency
BUILD SUCCESSFUL in 701ms
1 actionable task: 1 executed
Expected Behavior
The dependency should be excluded:
$ ./gradlew wrapper --gradle-version 9.2.1
BUILD SUCCESSFUL in 690ms
1 actionable task: 1 executed
$ ./gradlew dependencies --configuration=runtimeClasspath
> Task :dependencies
------------------------------------------------------------
Root project 'excluded-dependencies'
------------------------------------------------------------
runtimeClasspath - Runtime classpath of source set 'main'.
No dependencies
BUILD SUCCESSFUL in 715ms
1 actionable task: 1 executed
Context (optional)
No response
Self-contained Reproducer Project
https://github.com/ulrikls/excluded-dependencies
Gradle version
9.3.0
Gradle version that used to work
9.2.1
Build scan URL (optional)
No response
Your Environment (optional)
No response