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base repository: gpertea/stringtie
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base: v2.2.1
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head repository: gpertea/stringtie
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compare: v2.2.2
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  • 19 commits
  • 9 files changed
  • 3 contributors

Commits on Jan 28, 2022

  1. note about a desired jcov metric in print_predcluster()

    @gpertea
    gpertea committed Jan 28, 2022
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Commits on Mar 3, 2022

  1. ignoring terminal hanging introns, addressing issue #356

    @gpertea
    gpertea committed Mar 3, 2022
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Commits on Mar 4, 2022

  1. another take at preventing hanging terminal introns

    @gpertea
    gpertea committed Mar 4, 2022
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Commits on Jun 13, 2022

  1. fix #348 . Adds mutex to manage concurrent writing to covered referen… 

    …ce transcript file
    @gsatas
    gsatas committed Jun 13, 2022
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Commits on Jun 23, 2022

  1. Merge pull request #371 from gsatas/fix-covref-write-concurrency 

    fix #348 . Adds mutex to manage concurrent writing to covered referen…
    @gpertea
    gpertea authored Jun 23, 2022
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Commits on Jul 17, 2022

  1. switch to minimum g++ version 5

    @gpertea
    gpertea committed Jul 17, 2022
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Commits on Jul 18, 2022

  1. minor GSam cleanup

    @gpertea
    gpertea committed Jul 18, 2022
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Commits on Jul 24, 2022

  1. reverse & remove !eonly condition in print_predcluster L 17039

    @gpertea
    gpertea committed Jul 24, 2022
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Commits on Jan 19, 2023

  1. Update README.md

    @gpertea
    gpertea authored Jan 19, 2023
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Commits on Feb 9, 2023

  1. fix rare crash in merge_read_to_group()

    @gpertea
    gpertea committed Feb 9, 2023
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  2. fix rare crash in merge_read_to_group() addressing #389

    @gpertea
    gpertea committed Feb 9, 2023
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  3. Merge branch 'master' of ssh://github.com/gpertea/stringtie

    @gpertea
    gpertea committed Feb 9, 2023
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Commits on Mar 2, 2023

  1. GSamRecord copy operator must also copy sam_hdr_t* ref

    @gpertea
    gpertea committed Mar 2, 2023
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Commits on Oct 6, 2023

  1. fixed out of bounds error for sparsely covered guides

    @mpertea
    mpertea committed Oct 6, 2023
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Commits on Feb 9, 2024

  1. added basic test for short reads with guides

    @gpertea
    gpertea committed Feb 9, 2024
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Commits on Apr 19, 2024

  1. adding OvlTracker class for triangular matrix tracking of overlaps

    @gpertea
    gpertea committed Apr 19, 2024
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  2. wip: switching to OvlTracker instead of GVec<bool>

    @gpertea
    gpertea committed Apr 19, 2024
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Commits on Apr 20, 2024

  1. OvlTracker implemented, tests passing, incl. valgrind

    @gpertea
    gpertea committed Apr 20, 2024
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  2. patchfix release 2.2.2

    @gpertea
    gpertea committed Apr 20, 2024
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