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example.json
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135 lines (135 loc) · 4.39 KB
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[
{
"name": "Test Fold Job Number One",
"modelSeeds": [],
"sequences": [
{
"proteinChain": {
"sequence": "PREACHINGS",
"glycans": [
{
"residues": "NAG(NAG)(BMA)",
"position": 8
},
{
"residues": "BMA",
"position": 10
}
],
"modifications": [
{
"ptmType": "CCD_HY3",
"ptmPosition": 1
},
{
"ptmType": "CCD_P1L",
"ptmPosition": 5
}
],
"count": 1,
"maxTemplateDate": "2018-01-20",
"unpairedMsa": ">query\nPREACHINGS\n>unpaired seq 1\nPREA--INGS",
"templates": [
{
"mmcif": "data_example\n#\n_entry.id example\n#\nloop_\n_entity_poly_seq.entity_id\n_entity_poly_seq.hetero\n_entity_poly_seq.mon_id\n_entity_poly_seq.num\n1 n ILE 1\n1 n ASN 2\n#\nloop_\n_atom_site.group_PDB\n_atom_site.id\n_atom_site.type_symbol\n_atom_site.label_atom_id\n_atom_site.label_alt_id\n_atom_site.label_comp_id\n_atom_site.label_asym_id\n_atom_site.label_entity_id\n_atom_site.label_seq_id\n_atom_site.pdbx_PDB_ins_code\n_atom_site.Cartn_x\n_atom_site.Cartn_y\n_atom_site.Cartn_z\n_atom_site.occupancy\n_atom_site.B_iso_or_equiv\n_atom_site.auth_seq_id\n_atom_site.auth_asym_id\n_atom_site.pdbx_PDB_model_num\nATOM 1 N N . ILE A 1 1 ? -0.419 4.823 2.638 1.00 50.00 1 A 1\nATOM 2 C CA . ILE A 1 1 ? -1.153 3.546 2.630 1.00 50.00 1 A 1\nATOM 3 C C . ILE A 1 1 ? -0.652 2.720 1.466 1.00 50.00 1 A 1\nATOM 4 O O . ILE A 1 1 ? -0.702 3.163 0.318 1.00 50.00 1 A 1\nATOM 5 C CB . ILE A 1 1 ? -2.665 3.772 2.503 1.00 50.00 1 A 1\nATOM 6 C CG1 . ILE A 1 1 ? -3.178 4.608 3.681 1.00 50.00 1 A 1\nATOM 7 C CG2 . ILE A 1 1 ? -3.405 2.435 2.427 1.00 50.00 1 A 1\nATOM 8 C CD1 . ILE A 1 1 ? -4.573 5.155 3.438 1.00 50.00 1 A 1\nATOM 9 N N . ASN A 1 2 ? -0.162 1.534 1.737 1.00 50.00 2 A 1\nATOM 10 C CA . ASN A 1 2 ? 0.353 0.629 0.734 1.00 50.00 2 A 1\nATOM 11 C C . ASN A 1 2 ? -0.196 -0.763 1.037 1.00 50.00 2 A 1\nATOM 12 O O . ASN A 1 2 ? 0.116 -1.324 2.070 1.00 50.00 2 A 1\nATOM 13 C CB . ASN A 1 2 ? 1.873 0.642 0.772 1.00 50.00 2 A 1\nATOM 14 C CG . ASN A 1 2 ? 2.482 -0.176 -0.331 1.00 50.00 2 A 1\nATOM 15 O OD1 . ASN A 1 2 ? 1.796 -0.703 -1.202 1.00 50.00 2 A 1\nATOM 16 N ND2 . ASN A 1 2 ? 3.796 -0.304 -0.316 1.00 50.00 2 A 1\n#",
"queryIndices": [6, 7],
"templateIndices": [6, 7]
}
]
}
},
{
"proteinChain": {
"sequence": "REACHER",
"count": 1,
"useStructureTemplate": false
}
},
{
"dnaSequence": {
"sequence": "GATTACA",
"modifications": [
{
"modificationType": "CCD_6OG",
"basePosition": 1
},
{
"modificationType": "CCD_6MA",
"basePosition": 2
}
],
"count": 1
}
},
{
"dnaSequence": {
"sequence": "TGTAATC",
"count": 1
}
},
{
"rnaSequence": {
"sequence": "GUAC",
"modifications": [
{
"modificationType": "CCD_2MG",
"basePosition": 1
},
{
"modificationType": "CCD_5MC",
"basePosition": 4
}
],
"count": 1
}
},
{
"ligand": {
"ligand": "CCD_ATP",
"count": 1
}
},
{
"ligand": {
"ligand": "CCD_HEM",
"count": 2
}
},
{
"ion": {
"ion": "MG",
"count": 2
}
},
{
"ion": {
"ion": "NA",
"count": 3
}
}
],
"dialect": "alphafoldserver",
"version": 1
},
{
"name": "Test Fold Job Number Two",
"modelSeeds": [],
"sequences": [
{
"proteinChain": {
"sequence": "TEACHINGS",
"count": 1,
"maxTemplateDate": "2024-05-08"
}
},
{
"dnaSequence": {
"sequence": "TAGGACA",
"count": 1
}
}
],
"dialect": "alphafoldserver",
"version": 1
}
]