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Description
Hello DeepVariant team, thanks for great tool.
After we tried to upgrade our deepvariant installation to the latest release we encountered a problem with numpy installation, which I described here. The problem is caused by wheel - not by numpy itself, but this error raised several questions for me:
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For now looks like installing deepvariant with https://github.com/google/deepvariant/blob/r1.1/build-prereq.sh will fail on non
Ubuntu 16.04due tonumpyproblem. This problem won't be fixed in older versions ofnumpyI think - onlywheelcan fix it now. Or you can switchnumpy 1.18.5for1.19.3+? -
Part of this problem origins from using Python 3.6 if I understand correctly this, maybe you should update version of Python installing by script?
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I've just tested your installation script with one change: I added
Ubuntu 18.04to this check - looks like all good. If a problem was inUbuntu 14.04- maybe wide this check a bit? EvenUbuntu 20.04is released half a year ago.