Godot version

4.2.beta4

System information

Windows 11, AMD Ryzen 5 3600, RTX 2060

Issue description

The Godot engine will lose references to scenes UID cache, causing scenes to register as corrupted. Animations will still work and overall functionality will be retained, but the user loses the ability to open the corrupted scenes. The console will show the below error code. Because scene functionality will be preserved, I believe this has to do with how Godot handles the UID caching of scenes with custom resources

Steps to reproduce

This can happen when removing/renaming files whether inside or outside the Godot editor (more common outside the editor). It can also happen if you change, rename or delete properties from custom resources.

• Create a custom resource, add some properties
• Create a script that exports a variable of type custom resource
• Create a scene that uses that script. Assign an instance of the custom resource to the script
• Delete a property from custom resource script
• Move the scene in either the Godot editor or Explorer
• OR -
• Save the script, not the scene

Minimal reproduction project

N/A