Godot version

v4.1.stable.official [9704596]

System information

Godot v4.1.stable - Fedora Linux 38 (Cinnamon) - Vulkan (Compatibility) - Mesa Intel(R) UHD Graphics 630 (CML GT2) () - Intel(R) Core(TM) i5-10505 CPU @ 3.20GHz (12 Threads)

Issue description

Project's main window and all windows created and shown from code jump up after they appear on screen. There is no such issue in 4.0.3.

May be related to #79888

Steps to reproduce

1. Create a new project
2. Create main scene with any node in it
3. Run the project

Minimal reproduction project

Bug.zip