Error in `gemma': free(): invalid pointer: 0x00007fd0e37cbe7a #239
Description
Hello
I have compiled GEMMA 0.98.3 from source
When I execute gemma -help, it is working properly and sometimes it is not.
working:
[eylenbt@by0q4n] ~ $ ml GEMMA/0.98.3
[eylenbt@by0q4n] ~ $ gemma -help
GEMMA 0.98.3 (2020-11-28) by Xiang Zhou and team (C) 2012-2020
type ./gemma -h [num] for detailed help
options:
1: quick guide
2: file I/O related
3: SNP QC
4: calculate relatedness matrix
5: perform eigen decomposition
6: perform variance component estimation
7: fit a linear model
8: fit a linear mixed model
9: fit a multivariate linear mixed model
10: fit a Bayesian sparse linear mixed model
11: obtain predicted values
12: calculate snp variance covariance
13: note
14: debug options
The GEMMA software is distributed under the GNU General Public v3
-license show license information
see also http://www.xzlab.org/software.html, https://github.com/genetics-statistics
not working:
[eylenbt@by0q4n] ~ $ gemma -help
GEMMA 0.98.3 (2020-11-28) by Xiang Zhou and team (C) 2012-2020
type ./gemma -h [num] for detailed help
options:
1: quick guide
2: file I/O related
3: SNP QC
4: calculate relatedness matrix
5: perform eigen decomposition
6: perform variance component estimation
7: fit a linear model
8: fit a linear mixed model
9: fit a multivariate linear mixed model
10: fit a Bayesian sparse linear mixed model
11: obtain predicted values
12: calculate snp variance covariance
13: note
14: debug options
The GEMMA software is distributed under the GNU General Public v3
-license show license information
see also http://www.xzlab.org/software.html, https://github.com/genetics-statistics
*** Error in `gemma': free(): invalid pointer: 0x00007fd0e37cbe7a ***
======= Backtrace: =========
/lib64/libc.so.6(+0x81489)[0x7fd0e1b24489]
/tools/eb/software/releases/2018b/GSL/2.6/lib/../lib64/libgsl.so.25(gsl_rng_free+0x12)[0x7fd0e3350722]
gemma[0x40ee2d]
gemma[0x408ff4]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7fd0e1ac53d5]
gemma[0x40933f]
======= Memory map: ========
00400000-004f1000 r-xp 00000000 00:2a 203249716 /gpfs/gssgpfs1/biogrid/tools/eb/software/releases/2018b/GEMMA/0.98.3/bin/gemmaCan someone give any feedback on this? if necessary, I will give some more information.