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@mvdoc mvdoc commented May 6, 2022

fsl_prefix is needed to be specified only if FSL is installed with NeuroDebian (and users do not want to source it with /etc/fsl/fsl.sh every time). However, FSL is stuck to 5.0 in NeuroDebian, and most people would install FSL with other means (e.g. the python FSL installer). So I think we should set the prefix to blank by default (see #443).

This PR also changes the default 2D colormap from RdBu_covar to PU_BuOr_covar, which I believe is a better default.

`fsl_prefix` is needed to be specified only if FSL is installed with NeuroDebian (and users do not want to source it with `/etc/fsl/fsl.sh` every time). However, FSL is stuck to 5.0 in NeuroDebian, and most people would install FSL with other means (e.g. the python FSL installer). So I think we should set the prefix to blank by default (see #443).

This PR also changes the default 2D colormap from RdBu_covar to PU_BuOr_covar, which I believe is a better default.
@mvdoc mvdoc linked an issue May 6, 2022 that may be closed by this pull request
@mvdoc mvdoc merged commit ff34da7 into main May 6, 2022
@mvdoc mvdoc deleted the mnt/defaults branch June 9, 2022 18:12
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Error calling fsl-bet

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