Enable some Python 3 testing.#768
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jmchilton merged 8 commits intogalaxyproject:masterfrom Feb 23, 2018
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Well that found a bunch of Python 3 bugs at least... |
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Down to 2 failures! I have another commit ready that will fix the first once galaxyproject/galaxy-lib#89 is merged. |
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A freshly minted galaxy-lib 17.9.12 has been pushed to PyPI with your fix, thanks a bunch! |
With corresponding fixes. - Fix unneeded decode in test_shed_upload. - Update to latest version of gxformat2 for Python 3 fixes (galaxyproject/gxformat2#1).
Fix the following error:
```
File "/home/travis/build/galaxyproject/planemo/planemo/database/postgres.py", line 27, in list_databases
identifiers.append(line.split("|")[0].strip())
TypeError: 'str' does not support the buffer interface
Fix this failing test:
```
======================================================================
FAIL: Test :func:`planemo.io.conditionally_captured_io`.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/travis/build/galaxyproject/planemo/.tox/py34-quick/lib/python3.4/site-packages/nose/case.py", line 198, in runTest
self.test(*self.arg)
File "/home/travis/build/galaxyproject/planemo/tests/test_io.py", line 12, in test_io_capture
assert_equal(capture[0]["data"], "Problem...")
File "/home/travis/build/galaxyproject/planemo/tests/test_utils.py", line 235, in assert_equal
assert a == b, "%s != %s" % (a, b)
nose.proxy.AssertionError: Problem... != Problem...
"""Assert two things are equal."""
>> assert '\x1b[31mProblem...\x1b[0m' == 'Problem...', "%s != %s" % ('\x1b[31mProblem...\x1b[0m', 'Problem...')
```
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Rebased and green! |
peterjc
reviewed
Feb 23, 2018
| cite_urls = kwds.get("cite_url", []) | ||
| del kwds["cite_url"] | ||
| citations = map(UrlCitation, cite_urls) | ||
| citations = list(map(UrlCitation, cite_urls)) |
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How about using a list comprehension here?
citations = [UrlCitation(url) for url in cite_urls]Or, using the _ variable:
citations = [UrlCitation(_) for _ in cite_urls]
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Funnily we discussed this yesterday in a galaxy-lib PR: galaxyproject/galaxy-lib#88 (comment)
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Wonderful, wonderful - thanks so much @nsoranzo - this is amazing. |
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Lets see if these pass on Travis.