More generalized planemo testing enhancements.#491
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jmchilton merged 9 commits intogalaxyproject:masterfrom Jun 15, 2016
Merged
More generalized planemo testing enhancements.#491jmchilton merged 9 commits intogalaxyproject:masterfrom
jmchilton merged 9 commits intogalaxyproject:masterfrom
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... for shared functionality between testing inside Galaxy's test framework and planemo driven testing.
CWL and workflow tests now can specify more checksum types, a file to compare against, a method for comparison ('diff', 're_match', 're_match_multiline', 'sim_size', and 'contains') as well as other options such as 'sort', 'line_diff', etc....
xref galaxyproject#476
- Allow job to be embedded in `-tests.yml` artifacts - in addition to referncing job descriptions by file path. - Allow building CWL test cases from example commands - tool_init can now respect --test_case and --cwl at the same time. - Update CWL introduction docs to demonstrate building a test case and include a description of how to run it. - Update CWL introduction docs to demonstrate serving a CWL tool with Galaxy. Fixes galaxyproject#476.
docs/_writing_cwl_intro.rst
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| A later revision of this document ill discuss defining more | ||
| parameters for this tool and include information on generating and | ||
| running tests with planemo for CWL tools. | ||
| In addition to the file actual tool file, a test file will be generated |
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s/file actual tool file/actual tool file/
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-tests.ymlartifacts - in addition to referencing job descriptions by file path.Fixes #476 (except producing XUnit reports).