Workflow best practices: check that creator identifiers are URIs#1458
Merged
mvdbeek merged 3 commits intogalaxyproject:masterfrom Jul 4, 2024
Merged
Workflow best practices: check that creator identifiers are URIs#1458mvdbeek merged 3 commits intogalaxyproject:masterfrom
mvdbeek merged 3 commits intogalaxyproject:masterfrom
Conversation
mvdbeek
reviewed
Jul 1, 2024
mvdbeek
reviewed
Jul 1, 2024
mvdbeek
approved these changes
Jul 4, 2024
Contributor
Author
|
Thanks @mvdbeek, fine with me! Sorry for not getting back to your comments sooner. I haven't seen any workflows where the creator is not a list - I just wasn't sure if this could theoretically happen and pass validation elsewhere. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
From https://github.com/galaxyproject/iwc/blob/main/workflows/README.md#ensure-workflows-follow-best-practices :
This PR adds a check which will emit a warning if a workflow creator is a person and their identifier is not a URI.
I'm aware this function is meant to mirror the Galaxy UI - I can try and make a matching PR for the UI, though I'm weaker on Vue/JS than Python. Thought I would open this PR first to confirm if that's worthwhile.
Context for the PR: my team is scraping Galaxy workflow RO-Crates from WorkflowHub and found a few where the generated author metadata uses just the ORCID number for the
@idrather than the full ORCID URI. We are keen to help reduce those cases through improved linting!