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Allow missing conda_exec#1384

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mvdbeek merged 1 commit intogalaxyproject:masterfrom
mstabrin:patch-1
Aug 30, 2023
Merged

Allow missing conda_exec#1384
mvdbeek merged 1 commit intogalaxyproject:masterfrom
mstabrin:patch-1

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@mstabrin
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Hello everybody,
The command line option conda_exec was ignored during building the conda command.

Command:
planemo conda_install ./seqtk_seq.xml --conda_channels conda-forge,bioconda,defaults,rapidsai --conda_exec /opt/user_software/miniconda3/bin/mamba

Got the output:

Install conda target CondaTarget[rapids,version=23]
/home/stabrin/miniconda3/bin/conda list -f --json conda-libmamba-solver
...

Expected output:

Install conda target CondaTarget[seqtk,version=1.2]
/opt/user_software/miniconda3/bin/mamba list -f --json conda-libmamba-solver
...

It looked like the conda_exec option was not passed over to the CondaContext object.

The command line option `conda_exec` was ignored during building the conda command.
@mvdbeek
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mvdbeek commented Aug 30, 2023

Awesome, thank you!

@mvdbeek mvdbeek merged commit b413fe4 into galaxyproject:master Aug 30, 2023
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2 participants