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Fix test_run_gxtool_randomlines test on Galaxy dev branch#1373

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mvdbeek merged 1 commit intogalaxyproject:masterfrom
nsoranzo:fix_test_run_gxtool_randomlines
Jun 21, 2023
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Fix test_run_gxtool_randomlines test on Galaxy dev branch#1373
mvdbeek merged 1 commit intogalaxyproject:masterfrom
nsoranzo:fix_test_run_gxtool_randomlines

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which was failing with:

E           galaxy.tool_util.provided_metadata INFO 2023-06-19 12:49:16,823 [pN:main.1,p:15735,tN:LocalRunner.work_thread-0] One or more tool outputs is marked as failed ({'type': 'dataset', 'ext': 'data', 'dataset_id': 1, 'stderr': 'Unable to fetch file:///home/runner/work/planemo/planemo/tests/data/hello.txt\nCould not find handler for URI [file:///home/runner/work/planemo/planemo/tests/data/hello.txt]', 'failed': True}).

After galaxyproject/galaxy#15497 and follow-up galaxyproject/galaxy#15794 , data upload using "file://" URLs is allowed only for Galaxy admins. This adds a basic file_sources_conf.yml configuration file that allows planemo to upload from the test data directory.

which was failing with:

```
E           galaxy.tool_util.provided_metadata INFO 2023-06-19 12:49:16,823 [pN:main.1,p:15735,tN:LocalRunner.work_thread-0] One or more tool outputs is marked as failed ({'type': 'dataset', 'ext': 'data', 'dataset_id': 1, 'stderr': 'Unable to fetch file:///home/runner/work/planemo/planemo/tests/data/hello.txt\nCould not find handler for URI [file:///home/runner/work/planemo/planemo/tests/data/hello.txt]', 'failed': True}).
```

After galaxyproject/galaxy#15497 and
follow-up galaxyproject/galaxy#15794 ,
data upload using "file://" URLs is allowed only for Galaxy admins.
This adds a basic ``file_sources_conf.yml`` configuration file that
allows planemo to upload from the test data directory.
@nsoranzo nsoranzo requested a review from mvdbeek June 21, 2023 09:44
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awesome, thank you @nsoranzo!

@mvdbeek mvdbeek merged commit c017ef6 into galaxyproject:master Jun 21, 2023
@nsoranzo nsoranzo deleted the fix_test_run_gxtool_randomlines branch June 21, 2023 09:45
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2 participants