Make --channels also affect mulled channels and update/extend howto use bioconda artifacts#1227
Merged
mvdbeek merged 3 commits intogalaxyproject:masterfrom Oct 13, 2022
Merged
Conversation
bernt-matthias
commented
Apr 19, 2022
e223187 to
b6d6e75
Compare
5 tasks
b6d6e75 to
9b0f50d
Compare
--channels also affect mulled channeld and update/extend howto use bioconda artifacts
this was in part outdated due to the recent change in bioconda CI (packages and images are now available only as download) also document how to set conda channels for mulled container building
to the value given by `--conda_channels` xref galaxyproject/galaxy#13755
--channels also affect mulled channeld and update/extend howto use bioconda artifacts--channels also affect mulles channeld and update/extend howto use bioconda artifacts
--channels also affect mulles channeld and update/extend howto use bioconda artifacts--channels also affect mulled channels and update/extend howto use bioconda artifacts
mvdbeek
approved these changes
Oct 13, 2022
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Adapted
--channelssuch that it also affects Galaxy's mulled channels config.Update docs due to the recent change in bioconda CI (packages and images are now available only as download)
Also document how to set conda channels for mulled container building (see also galaxyproject/galaxy#13755)