Passed tests are listed as having failed individually. #363
Description
I just checked out Galaxy's dev branch and ran planemo test on the joiner tool like so:
(.venv)damian@damian-VirtualBox:~/versioned/galaxy/tools/filters$ planemo test --galaxy_root=../.. joiner.xml
All tests passed. However, I got the following output on the console at the very end of the test run:
Ran 4 tests in 418.941s
OK
functional_tests.py INFO 2015-10-31 19:52:48,187 Shutting down
functional_tests.py INFO 2015-10-31 19:52:48,188 Shutting down embedded web server
functional_tests.py INFO 2015-10-31 19:52:48,196 Embedded web server stopped
functional_tests.py INFO 2015-10-31 19:52:48,197 Shutting down app
galaxy.jobs.handler INFO 2015-10-31 19:52:48,197 sending stop signal to worker thread
galaxy.jobs.handler INFO 2015-10-31 19:52:48,197 job handler queue stopped
galaxy.jobs.runners INFO 2015-10-31 19:52:48,199 TaskRunner: Sending stop signal to 2 worker threads
galaxy.jobs.runners INFO 2015-10-31 19:52:48,208 LocalRunner: Sending stop signal to 5 worker threads
galaxy.jobs.handler INFO 2015-10-31 19:52:48,220 sending stop signal to worker thread
galaxy.jobs.handler INFO 2015-10-31 19:52:48,223 job handler stop queue stopped
functional_tests.py INFO 2015-10-31 19:52:48,224 Embedded Universe application stopped
functional_tests.py INFO 2015-10-31 19:52:48,227 Cleaning up temporary files in /tmp/tmpk4bkAg/tmpmFctoI
galaxy.jobs.handler INFO 2015-10-31 19:52:48,913 sending stop signal to worker thread
galaxy.jobs.handler INFO 2015-10-31 19:52:48,917 job handler queue stopped
galaxy.jobs.runners INFO 2015-10-31 19:52:48,918 TaskRunner: Sending stop signal to 2 worker threads
galaxy.jobs.runners INFO 2015-10-31 19:52:48,919 LocalRunner: Sending stop signal to 5 worker threads
galaxy.jobs.handler INFO 2015-10-31 19:52:48,920 sending stop signal to worker thread
galaxy.jobs.handler INFO 2015-10-31 19:52:48,921 job handler stop queue stopped
All 4 test(s) executed passed.
join1[0]: failed
join1[1]: failed
join1[2]: failed
join1[3]: failed