File order in tar-ball from shed_upload #159
Description
I know the order does not matter by the time the tar-ball is pushed to the Tool Shed, but for local checks it would be nice if the .shed.yml ordering given in the include directives was preserved.
e.g.
$ cat ~/repositories/pico_galaxy/tools/venn_list/.shed.yml
name: venn_list
owner: peterjc
homepage_url: https://github.com/peterjc/pico_galaxy/tools/venn_list
remote_repository_url: https://github.com/peterjc/pico_galaxy/tools/venn_list
description: Draw Venn Diagram (PDF) from lists, FASTA files, etc
long_description: |
Draw Venn Diagrams for 1, 2 or 3 sets of identifiers as a PDF file.
Can parse FASTA, FASTQ, SFF or tabular files (taking column one) for identifiers.
This can be combined with the extensive tabular file filtering and manipulation
tools within Galaxy to prepare the input data.
Uses the R/Bioconductor package limma to draw the PDF file, called from Python with
rpy.
Uses Biopython to parse SFF files.
categories:
- Graphics
- Sequence Analysis
- Visualization
type: unrestricted
include:
- README.rst
- venn_list.py
- venn_list.xml
- tool_dependencies.xml
This gave the following:
$ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/venn_list
cp /tmp/tmpWm9B9U shed_upload.tar.gz
$ tar -xvf /tmp/tmpWm9B9U
venn_list.py
tool_dependencies.xml
README.rst
venn_list.xml