Accept inputs for collection_type: list:paired for workflow testing #1018
Description
Enable specifying in *test.yml a set of inputs for collection_type: list:paired. A list of dataset pairs is very frequently used as workflow input by our users who analyze NGS paired-end reads.
I am using planemo test to test a simple example workflow: select_paired_list_fastq, https://usegalaxy.eu/u/tshtatland/w/selectpairedlistfastq . I was looking for something like this to be possible to specify in *test.yml:
- doc: "Test sample data for select_paired_list_fastq_wo_param workflow"
job:
input_paired_list_fastq:
class: Collection
collection_type: list:paired
elements:
- identifier: test1
class: Collection
collection_type: paired
elements:
- identifier: forward
class: File
location: https://zenodo.org/record/3875556/files/test1.1.fastq
filetype: fastqsanger
- identifier: reverse
class: File
location: https://zenodo.org/record/3875556/files/test1.2.fastq
filetype: fastqsanger
- identifier: test2
class: Collection
collection_type: paired
elements:
- identifier: forward
class: File
location: https://zenodo.org/record/3875556/files/test2.1.fastq
filetype: fastqsanger
- identifier: reverse
class: File
location: https://zenodo.org/record/3875556/files/test2.2.fastq
filetype: fastqsanger