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Updating workflows/transcriptomics/rnaseq-pe from 0.1 to 0.2#148

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lldelisle merged 2 commits intogalaxyproject:mainfrom
planemo-autoupdate:workflows/transcriptomics/rnaseq-pe
Nov 30, 2022
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Updating workflows/transcriptomics/rnaseq-pe from 0.1 to 0.2#148
lldelisle merged 2 commits intogalaxyproject:mainfrom
planemo-autoupdate:workflows/transcriptomics/rnaseq-pe

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@planemo-autoupdate
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Hello! This is an automated update of the following workflow: workflows/transcriptomics/rnaseq-pe. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a

The workflow release number has been updated from 0.1 to 0.2.

@lldelisle
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What is strange is that in the file .ga it changed from galaxy0 to galaxy1...

@lldelisle
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The tool toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy1 is not yet installed in usegalaxy.org.
I need to change the test case because it is too large and takes too long.

@mvdbeek
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mvdbeek commented Nov 29, 2022

It's also installed now and passing.

@lldelisle
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Yes I was wondering if I could change the input test data as I think the CI is a bit long...

@lldelisle
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But maybe I can do it in a second time.

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@mvdbeek mvdbeek left a comment

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That's up to you, there's no cost to having another version :)

@lldelisle
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Reducing the size of input test did not change the running time...

@lldelisle lldelisle merged commit 0dd96dc into galaxyproject:main Nov 30, 2022
@planemo-autoupdate planemo-autoupdate deleted the workflows/transcriptomics/rnaseq-pe branch December 17, 2022 07:49
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3 participants