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vignettes failed that require INLA #11

@matteodelucchi

Description

@matteodelucchi

Think about:

  1. Don't run vignettes that need INLA.
  2. Precompute and compile vignettes based on precompute
Flavor: r-devel-linux-x86_64-debian-gcc
Check: re-building of vignette outputs, Result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building 'data_simulation.Rmd' using rmarkdown
  
  Quitting from lines 29-58 [fit_model] (data_simulation.Rmd)
  Error: processing vignette 'data_simulation.Rmd' failed with diagnostics:
  there is no package called 'INLA'
  --- failed re-building 'data_simulation.Rmd'
  
  --- re-building 'mixed_effect_BN_model.Rmd' using rmarkdown
  --- finished re-building 'mixed_effect_BN_model.Rmd'
  
  --- re-building 'model_specification.Rmd' using rmarkdown
  --- finished re-building 'model_specification.Rmd'
  
  --- re-building 'multiprocessing.Rmd' using rmarkdown
  
  Quitting from lines 88-130 [benchmarking] (multiprocessing.Rmd)
  Error: processing vignette 'multiprocessing.Rmd' failed with diagnostics:
  worker initialization failed: there is no package called 'INLA'
  --- failed re-building 'multiprocessing.Rmd'
  
  --- re-building 'paper.Rmd' using rmarkdown
  --- finished re-building 'paper.Rmd'
  
  --- re-building 'parameter_learning.Rmd' using rmarkdown
  
  Quitting from lines 67-72 [unnamed-chunk-3] (parameter_learning.Rmd)
  Error: processing vignette 'parameter_learning.Rmd' failed with diagnostics:
  there is no package called 'INLA'
  --- failed re-building 'parameter_learning.Rmd'
  
  --- re-building 'quick_start_example.Rmd' using rmarkdown
  --- finished re-building 'quick_start_example.Rmd'
  
  --- re-building 'structure_learning.Rmd' using rmarkdown
  --- finished re-building 'structure_learning.Rmd'
  
  SUMMARY: processing the following files failed:
    'data_simulation.Rmd' 'multiprocessing.Rmd' 'parameter_learning.Rmd'
  
  Error: Vignette re-building failed.
  Execution halted

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