| 2020 |
|
|
|
|
|
| January |
13 |
Bradly |
2019 Recap and Planning |
YouTube |
|
|
20 |
Susan |
Hydraulic Fracturing of Embryos |
YouTube |
|
|
27 |
Devansh and Yash |
DL Architectures |
YouTube |
|
| February |
3 |
Ujjwal |
DNA Fingerprinting |
YouTube |
|
|
10 |
Assorted |
New Papers, Ideas |
YouTube |
|
|
17 |
Richard |
Diatom Movement |
YouTube |
|
|
24 |
Tom Portegys |
Bio-inspired Modeling |
YouTube |
|
| March |
2 |
Bradly/Jesse |
Open Data Day/Free Energy Principle |
YouTube |
|
|
9 |
Bradly |
Recap of Open Ideas |
YouTube |
|
|
16 |
George Mikhailovsky |
Structuredness and Entropy |
YouTube |
|
|
23 |
Bradly/Ujjwal |
Tunicate Development/CC3D Update |
YouTube |
|
|
30 |
|
Neuromatch 1.0 |
YouTube |
|
| April |
6 |
Ujjwal/Bradly |
EfficientNet/Axolotl Data Review/Education Stack |
YouTube |
|
|
13 |
Ujjwal/Bradly |
Task Review, Mikhailovsky and Gordon, OpenDevoCell |
YouTube |
|
|
20 |
Bradly |
Developmental Papers, open discussion |
YouTube |
|
|
27 |
Ujjwal/Bradly/Richard |
Update on 3-D modeling, Education and Task Reviews |
YouTube |
|
| May |
4 |
Bradly/Richard |
Virtual Worm presentation, Triangular Life |
YouTube |
|
|
11 |
GSoC Students (Ujjwal, Mayukh) |
Welcome and Summer Overview |
YouTube |
|
|
18 |
Bradly/Jesse/Mayukh |
Project task review, GSoC Update |
YouTube |
|
|
25 |
|
Neuromatch 2.0 |
Crowdcast |
|
| June |
1 |
GSoC Updates, Bradly |
Issues review, Assorted Developmental Bio |
YouTube |
|
|
8 |
GSoC Updates, Bradly |
General Biological Models, Euler Paths for Life |
YouTube |
|
|
13 |
Bradly |
Guided tour of DevoWorm (circa June 2020) |
YouTube |
Twitter |
|
15 |
GSoC Updates, Bradly |
Beak/Wing shape models; Periodicity in the Embryo |
YouTube |
|
|
22 |
|
SIPS 2020 |
|
|
|
29 |
GSoC Updates, Bradly |
Issues review, Dev-inspired Unsupervised Learning |
YouTube |
Twitter |
| July |
6 |
GSoC Updates, Bradly |
TDA for Developmental Bio |
YouTube |
Twitter |
|
13 |
GSoC Updates, Jesse, Krishna |
Assorted topics |
YouTube |
Twitter |
|
20 |
GSoC Updates, Bradly, Susan |
Embryo Periodicity |
YouTube |
Twitter |
|
27 |
GSoC Updates, Bradly |
3-D Cell Culture, Mesoscale Modeling |
YouTube |
Twitter |
| August |
3 |
Mayukh, Bradly, Susan |
EmbryoGANs and Axolotl image representation |
YouTube |
Twitter |
|
10 |
Mayukh, Ujjwal, Bradly, Susan |
Embryo networks, Bacillaria cognition, Chaos |
YouTube |
Twitter |
|
17 |
GSoC Updates, Bradly, Susan |
Chaos and Diffusion-limited Aggregation, DevoLearn |
YouTube |
Twitter |
|
24 |
Bradly, Richard, GSoC Updates |
Laplacian Embryo, DevoLearn |
YouTube |
Twitter |
|
31 |
Bradly, Susan, Ujjwal, Mayukh |
GSoC Final Presentations, Agent-based Modeling |
YouTube |
Twitter |
| September |
7 |
Bradly, Richard |
Follow-up on Summer Projects |
YouTube |
Twitter |
|
14 |
Bradly |
Community-building, Growth, Form, and Theory |
YouTube |
Twitter |
|
21 |
|
Break |
|
|
|
28 |
Bradly, Susan |
OpenWorm Annual Meeting prep, Microscopy |
YouTube |
Twitter |
| October |
5 |
Bradly, Dick |
Hacktoberfest, Multidimensional Analysis |
YouTube |
Twitter |
|
12 |
Susan, Krishna |
Assorted, Cells in Microgravity |
YouTube |
Twitter |
|
19 |
|
ASAPBio Preprints |
YouTube |
Synthetic Daisies |
|
26 |
|
Neuromatch 3.0 |
YouTube |
Synthetic Daisies |
| November |
2 |
Bradly |
Non-neuronal Cognition, Deep Learning and Cell Division |
YouTube |
Twitter |
|
9 |
Bradly |
Notetaking Strategies, Cell-type Dependent Morphogenesis and Connectomics |
YouTube |
Twitter |
|
16 |
Bradly, Krishna |
General Biological ML Model, Development of Brains and Meaning |
YouTube |
Twitter |
|
23 |
Susan, Mayukh |
Elastography/Gigapixels, DevoL Paper/Torch Dreams, Interactions/Agency |
YouTube |
Twitter |
|
30 |
Bradly, Krishna |
Computational Pareidolia, Temporal Scaling, and Deep Neural Control |
YouTube |
Twitter |
| December |
7 |
|
NeurIPS |
|
|
|
14 |
Bradly |
Input Data, Physics of Cell Temporality |
YouTube |
Twitter |
|
21 |
Bradly, Dick, Ujjwal |
Physics, Embryos, and Evolution; DevoLearn |
YouTube |
Twitter |
|
28 |
|
Happy Holidays! |
|
|
| 2021 |
|
|
|
|
|
| January |
4 |
|
Happy Holidays! |
|
|
|
11 |
Bradly, Susan |
2020 Review, GSoC 2021 planning, and First Embryos/Molecular Condensates |
YouTube |
Twitter |
|
18 |
Bradly, Susan, Krishna |
2021 Submission Planning, Devo-ML, Physics and Geometry of Life |
YouTube |
Twitter |
|
25 |
Bradly, Krishna |
Project board review, Evolutionary Theory and Deep Evolutionary History |
YouTube |
Twitter |
| February |
1 |
Mainak, Krishna, Bradly |
ResNet and Developmental training data, Survival of Systems, and Deep Evolution II |
YouTube |
Twitter |
|
8 |
Shruti, Bradly, Mayukh |
Advances in DevoLearn, VGG/Style Transfer, Systems Development |
YouTube |
Twitter |
|
15 |
Bradly, Krishna, Dick, Mainak |
Darwin Day, Ants and Plants, Eggs and PI Theory |
YouTube |
Twitter |
|
22 |
Bradly, Shruti, Krishna |
DevoLearn 0.3.0, Bias in AI, Voice Emotion Recognition, Development of Multicellular Shape |
YouTube |
Twitter |
| March |
1 |
Bradly |
GSoC Projects and Onboarding, Mechanotransduction and GRNs |
YouTube |
Twitter |
|
8 |
Mainak, Tharun, Bradly |
Deep Learning for Cell Division and Diatoms, Cellular Automata, GSoC Onboarding |
YouTube |
Twitter |
|
15 |
Param, Shruti, Mainak, Bradly |
GSoC Demos, Cellular Automata, Modeling the Emergence of Development |
YouTube |
Twitter |
|
22 |
Krishna, Bradly, Debojyoti |
Onboarding, Mathematics of DevoWorm, Simulating Developmental Processes |
YouTube |
Twitter |
|
29 |
Bradly, Jesse |
Mathematics of DevoWorm, Paleodevelopment, Wiring Neural Circuits I |
YouTube |
Twitter |
| April |
5 |
Bradly, Shruti |
Cellular Automata Rules, Neural Organoids, Wiring Neural Circuits II |
YouTube |
Twitter |
|
12 |
Debo, Yash, Bradly |
Biological Cell Separability, Cybernetic Logic, Learning and Memory |
YouTube |
Twitter |
|
19 |
Krishna, Shruti, Dick, Bradly |
Graph/Cellular Automata NNs, Diatom Cognition, Origins of the Embryo |
YouTube |
Twitter |
|
26 |
Bradly, Dick, Akshay |
Patterns in Networks/Seashells, Digital Bacillaria, Embryos/Organoids |
YouTube |
Twitter |
| May |
3 |
Bradly, Krishna |
DevoLearn, Biological Networks, Branching, Learning, and Timing |
YouTube |
Twitter |
|
10 |
Bradly, Shruti, Krishna |
Neural Cellular Automata, Regeneration, Hox genes and body plans |
YouTube |
Twitter |
|
17 |
Bradly, Dick |
Complex Networks, Developmental Trajectories in Embryos and Brains |
YouTube |
Twitter |
|
24 |
|
Spring Break! |
|
|
|
31 |
Mainak, Bradly |
OpenWorm turns 10! Open-source Community, Info Processing, and Symmetry |
YouTube |
Twitter |
| June |
7 |
Bradly, Mainak, Dick |
GSoC Activities Update #1, Geometry of Cells, Embryos from Input Cells |
YouTube |
Twitter |
|
14 |
Bradly, Mainak |
GSoC Update #2, Developmental Networks, Bio Models, NKS, and BNN-ANNs |
YouTube |
Twitter |
|
21 |
Bradly, Mainak |
GSoC Update #3 (Segmentation Maps), Steve McGrew, Cephalod Brains |
YouTube |
Twitter |
|
28 |
Bradly, Mainak |
GSoC, Update #4, Brain Networks, Differential Growth, Intelligent Materials |
YouTube |
Twitter |
| July |
5 |
|
Networks 2021, Neuromatch |
|
|
|
12 |
Bradly, Mainak |
GSoC #5/6, Networks Redux, Light Environments, Models of Cell Tracking |
YouTube |
Twitter |
|
19 |
Bradly, Mainak |
GSoC #7, Proprioceptive Environment, Thermal Optima, Cognitive Models |
YouTube |
Twitter |
|
26 |
Bradly, Mainak |
GSoC #8, Developmental Agents, Thermotaxis, Cell Regulatory Networks |
YouTube |
Twitter |
| August |
2 |
Bradly, Mainak |
GSoC #9, Math of DevoWorm, Early Response to Environment and Emergence |
YouTube |
Twitter |
|
9 |
Bradly, Mainak |
GSoC #10, Developmental Game Theory, Landscapes, and Liquid Crystal Bio |
YouTube |
Twitter |
|
16 |
Bradly, Mainak |
GSoC #11, Size Scaling of Cells, Contingent Tapes of Life, LCB-II |
YouTube |
Twitter |
|
23 |
Bradly, Mainak, Akshay |
DevoLearn, Digital Shape/Geometry, LCB III, Pathways, Ethomorphogenesis |
YouTube |
Twitter |
|
30 |
Bradly |
DZ-DL Review, Bacillaria Aneural Cognition, Differential Morphogenesis |
YouTube |
Twitter |
| September |
6 |
|
Labor Day |
|
|
|
13 |
Bradly |
Hacktoberfest, Roles and Opportunities, Criticality and Morphogenesis |
YouTube |
Twitter |
|
20 |
Bradly |
Digital Bacillaria Roadmap, Model Organism Zoo, Connectome/Projectome |
YouTube |
Twitter |
|
27 |
Bradly |
Hacktoberfest, 2021 annual update, Complex Systems and Cell Projections |
YouTube |
Twitter |
| October |
4 |
Bradly |
Hacktoberfest, Oct4 Day, Zebrafish Animations, Marine Invertebrates |
YouTube |
|
|
11 |
Bradly, Tharun, Ujjwal |
Diatom Hacktoberfest, Deep Sets/Neural Processes, Neurointeractome |
YouTube |
Twitter |
|
18 |
Bradly |
Hacktoberfest, Planarian Body Plan Network, Regulatory Networks |
YouTube |
Twitter |
|
25 |
Bradly |
Segmenting Diatoms, Topological Analysis, Aspects of Morphogenesis |
YouTube |
Twitter |
| November |
1 |
Bradly, Dick |
Diatom Model of Directional Movement, Morphogenesis and Models |
YouTube |
Twitter |
|
8 |
Bradly, Dick |
Diatom Modeling, Cellular Automata, Embryonic Movements |
YouTube |
Twitter |
|
15 |
Bradly, Dick |
Diatom Modeling II, Turing Morphogenesis, Development Genetical-physics |
YouTube |
Twitter |
|
22 |
Susan, Bradly |
Diatom Modeling III, Tissue Physics, Mutational Diversity |
YouTube |
Twitter |
|
29 |
|
MAIN, NM4 |
|
|
| December |
6 |
Karan, Bradly |
Microscopy Image Analysis, Diatom Patterning, Cambrian Development |
YouTube |
Twitter |
|
13 |
Susan, Bradly |
Soft Active Materials, Liquid Crystal Bio III, Biological Intelligence |
YouTube |
Twitter |
|
20 |
|
Happy Holidays! |
|
|
|
27 |
|
Happy Holidays! |
|
|
| 2022 |
|
|
|
|
|
| January |
3 |
|
Happy Holidays! |
|
|
|
10 |
Bradly |
Looking forward, Lab Preprints, 3-D microscopy, and Soft Biomaterials |
YouTube |
Twitter |
|
17 |
Tom, Bradly, Dick |
Life to the Stars, 1-D Ising models and Mollusk shells, Stochastic Bio |
YouTube |
Twitter |
|
24 |
Mainak, Karan, Bradly |
Archaea Shapes, Transformers for Bio, Crumpled Biology, Dinosaur Embryos |
YouTube |
Twitter |
|
31 |
Susan, Mainak, Bradly |
Tensegrity in cells, Sea Urchin and Neural CAs, Fitness Landscapes |
YouTube |
Twitter |
| February |
7 |
Bradly |
Hypergraphs for Developmental Phenotypes, Cybernetics and Population Genetics of Daisyworld |
YouTube |
Twitter |
|
14 |
|
No Meeting |
|
|
|
21 |
Bradly, Karan |
Brain Gyrification and Evo-devo, Computational Embeddings, Towhee open-source |
YouTube |
Twitter |
|
28 |
Bradly |
Assorted, GSoC 2022, Rein Control and Daisyworld |
YouTube |
Twitter |
| March |
7 |
Bradly, Harikrishna |
Spatial Transcriptomics, Axolotl models, Bioengineering and collectives |
YouTube |
Twitter |
|
14 |
Bradly |
How to GSoC Proposal, Spatial Transcriptomics II, Principles of Emergence |
YouTube |
Twitter |
|
21 |
Bradly, Susan |
GSoC Update, Soft Matter and Aneural Behavior, Synteny as Building Blocks |
YouTube |
Twitter |
|
28 |
Bradly, Susan, Harikrishna |
Aneural models, Soft Materials/Spherical Projections, Topological Morphogenesis |
YouTube |
Twitter |
| April |
4 |
Bradly, Karan, Susan |
Graph NNs/Representations, Axolotl embryo modeling, Multiple Viewpoint Reconstruction |
YouTube |
Twitter |
|
11 |
Bradly, Dick |
New Directions in Networks, One-cell Embryo Physics, and Jamming Phase Transitions |
YouTube |
Twitter |
|
18 |
Bradly, Dick |
Data Sources for Development, GSoC Q&A, Jamming Phase Transitions II |
YouTube |
Twitter |
|
25 |
Bradly, Dick |
Multiview Imaging, GNNs, Cell tracking Methods, Metabolic and Neuronal Network Origins |
YouTube |
Twitter |
| May |
2 |
Bradly |
Update, Embryo Energetics, Experimental Evolution |
YouTube |
|
|
9 |
Bradly, Dick, Susan, Karan |
Sphere Contour Selection, 13 Open Problems, Cell Migration Network, Sensory Evolution |
YouTube |
Twitter |
|
16 |
|
No meeting |
|
|
|
23 |
Bradly, GSoC Students |
Intro to GSoC 2022: Digital Microspheres and D-GNNs. Interfacing DevBio with Theory |
YouTube |
Twitter |
|
30 |
Bradly, Jiahang |
Community Period for GSoC, four GNN papers, Plasmodium collectives and soft materials |
YouTube |
Twitter |
| June |
6 |
Bradly, Tom, Morgan |
Community Period for GSoC, Ongoing Project Review, Body Plan Identity |
YouTube |
Twitter |
|
13 |
Bradly, Jiahang, Karan, Harikrishna |
Preparing for GSoC, Project Management Strategies, Cellular Modeling |
YouTube |
Twitter |
|
20 |
Bradly, Wataru, Karan, Harikrishna |
GSoC Project Updates, Smooth Moves in Diatoms, New Directions in C. elegans Modeling |
YouTube |
Twitter |
|
27 |
Bradly, Karan |
GSoC Updates, Activity Review, Differentiation Trees, Beyond Waddington Landscapes |
YouTube |
Twitter |
| July |
4 |
|
No meeting |
|
|
|
11 |
Bradly |
GSoC Project Updates, Issues Update, Networks as Differentiation Waves and Epithelia |
YouTube |
Twitter |
|
20 |
Bradly |
GSoC Project Updates, Light Exposure Effects in Embryos, Push-pull Pattern Formation |
YouTube |
Twitter |
|
25 |
Bradly |
GSoC project updates, Systems Biology Integration, Push-pull Pattern Formation II |
YouTube |
Twitter |
| August |
1 |
Bradly |
GSoC project updates, Symmetries, GNNs and the Topological Analysis of Development |
YouTube |
Twitter |
|
8 |
|
No meeting |
|
|
|
15 |
Bradly |
Computation of Development/Regeneration in Single-Cell Models, Open-source Initiatives |
YouTube |
Twitter |
|
22 |
Bradly |
Image transformation, tracking/force microscopy, mu-resolution, shape characterization |
YouTube |
Twitter |
|
29 |
Bradly, Assorted |
Project Updates, Diatom Diversity and Modes of Movement, Push-Pull Morphogenesis III |
YouTube |
Twitter |
| September |
5 |
Bradly, Assorted |
Digital Bacillaria, GSoC Updates, Cell types, development, and regeneration in Axolotl |
YouTube |
Twitter |
|
12 |
Bradly, Assorted |
Open Source, Symmetry-breaking and movement, and simulating Drosophila eye development |
YouTube |
Twitter |
|
19 |
Bradly, Alon |
Diatom movement tracking, DDEs, inheritance and morphogenesis in C. elegans |
YouTube |
Twitter |
|
26 |
Bradly |
Project updates (Cancer Imaging, DevoLearn), C. elegans synapse and neuronal diversity |
YouTube |
Twitter |
| October |
3 |
Dick, Bradly |
Differentiation waves, Janus-faced logic, mitochondrial networks, energetic dynamics |
YouTube |
Twitter |
|
10 |
Bradly, Assorted |
Diatom Dynamics, Biological Tensegrity, Nervous System Structurogenesis in Organoids |
YouTube |
Twitter |
|
17 |
Bradly, Alon |
C. elegans multimodal integration/push-pull morphogenesis, shape and differentiation |
YouTube |
Twitter |
|
24 |
Bradly |
Why no Lamarckism? Physics/shape in cell systems, Minimal cells, Light field imaging |
YouTube |
Twitter |
|
31 |
Assorted |
Breast Cancer Physics, Composing Braitenberg Vehicles, Simulating Tensegrity |
YouTube |
Twitter |
| November |
7 |
|
No meeting |
|
|
|
14 |
Bradly |
Tensegrity in Sim and Cells, DW Annual Review, Feedback and Waves, Morphogenesis |
YouTube |
Twitter |
|
21 |
Bradly |
Making a Statistical Mask, Origins of Early Life, Minimal Cells, Autocatalytic Sets |
YouTube |
Twitter |
|
28 |
Bradly, Susan |
Modeling biological tensegrity networks, chemical perceptrons, Neural Operators |
YouTube |
Twitter |
| December |
5 |
Bradly |
Spherical embryo measures, flat embryo maps, 2D, 3D processes, cross-species hourglass |
YouTube |
Twitter |
|
12 |
|
Learning on Graphs (LoG) , MeMoDevo |
|
|
|
19 |
Susan, Bradly |
Workshop(s) recap/updates, Sodaplay tensegrity, Morphogenetic Tug of Wars and Locks |
YouTube |
Twitter |
|
26 |
|
Happy Holidays! |
|
|
| 2023 |
|
|
|
|
|
| January |
2 |
|
Dynamics Days 2023 |
|
|
|
9 |
Susan, Bradly |
[1] (Bio)tensegrity prism networks, D-GNNs and DevoGraph, Self-organizing biophysics |
YouTube |
Twitter |
|
16 |
Susan, Bradly |
[2] DevoLearn/DevoGraph open-source, Particle Lenia and cell-cell interactions |
YouTube |
Twitter |
|
23 |
Susan, Bradly, Sushmanth |
[3] 3-D CNNs, recap of Symmetries paper and MEMoDevo, and Tensegrity Networks |
YouTube |
Twitter |
|
30 |
Susan, Dick, Bradly |
[4] Cell packings, Modeling the origins of early life, fossil embryos and brains |
YouTube |
Twitter |
| February |
6 |
Sushmanth, Bradly |
[5] DevoWorm on Huggingface, Modeling Autocatalysis, Morphogenetic Collectives |
YouTube |
Twitter |
|
13 |
Susan, Sushmanth, Bradly |
[6] DevoWorm on Huggingface II, GSoC, Tensegrity Networks II, Vesicle Sims II |
YouTube |
Twitter |
|
20 |
Gautham, Bradly |
[7] DevoLearn, Apoptosis + Mechanosensation, C. elegans GNNs, Network Universality |
YouTube |
Twitter |
|
27 |
Bradly |
[8] D-GNNs project, Second Law and Waddington landscapes, tempo of development |
YouTube |
Twitter |
| March |
6 |
Sushmanth, Bradly |
[9] GSoC, Origins of the Embryos, Alternative Histories, Swarms and Microswimmers |
YouTube |
Twitter |
|
13 |
Sushmanth, Bradly |
[10] DevoLearn roadmap, GSoC, local/global ABMs, analyzing butterfly wings |
YouTube |
Twitter |
|
20 |
Sushmanth, Bradly |
[11] Physical Modeling, GSoC, Digits in vitro, Curvatures and Condensates |
YouTube |
Twitter |
|
27 |
Sushmanth, Susan, Bradly |
[12] DevoLearn docs, Multiphysics, Bio + Physics, Morphogenetic Curvatures |
YouTube |
Twitter |
| April |
3 |
|
No meeting |
|
|
|
10 |
Bradly |
[13] Life's Origins (real/artificial), Graph Models, Curving and Jamming |
YouTube |
Twitter |
|
17 |
Bradly |
[14] devoworm.github.io and docs, Symmetries in Early Life and Development |
YouTube |
Twitter |
|
24 |
Bradly |
[15] Diatoms and DevoLearn/Graph, Synthetic Morphology, and D-GNN Readings |
YouTube |
Twitter |
| May |
1 |
Sushmanth, Bradly |
[16] SAM + DevoLearn, Miller-Urey + RNA World, Mammalian Cells, C. elegans |
YouTube |
Twitter |
|
8 |
Susan, Bradly, Himanshu, Sushmanth |
[17] GSoC Community, Embryos/ball microscope, Assembly at the edge of life |
YouTube |
Twitter |
|
15 |
Bradly, Sushmanth |
[18] Segment Cell Tracking, Community Period, Prime Editing and Cell Cycle |
YouTube |
Twitter |
|
22 |
Bradly, Sushmanth |
[19] Fossil Diatoms, SAM prompting, curvatures and planes, cell lineages |
YouTube |
Twitter |
|
|
|
Syncell 2023 |
|
|
|
29 |
Bradly, Sushmanth |
[20] SAM to cell lineages, dev-enviro interactions, triangular planes |
YouTube |
Twitter |
| June |
3 |
Bradly, Sushmanth, Himanshu |
[21] GSoC Updates, R-D Morphogenesis, Particle Lenia, Game of Life and CAs |
YouTube |
Twitter |
|
12 |
Bradly, Sushmanth, Himanshu |
[22] DevoWorm DL, Synthetic Cells, Digital Collectives and Pattern Formation |
YouTube |
Twitter |
|
19 |
Bradly, Sushmanth, Jiahang |
[23] Towards a biological embryo model, GSoC, TDA/GNNs and Embryo Networks |
YouTube |
Twitter |
|
26 |
Bradly, Sushmanth |
[24] SAM and MedSAM, making monkey embryoids in culture, shear jamming |
YouTube |
Twitter |
| July |
3 |
Assorted |
[25] GSoC Updates, R-D Morphogenesis, Particle Lenia, Game of Life and CAs |
YouTube |
Twitter |
|
10 |
Bradly |
[26] Genomics of Differentiation, Thompsonian Grid Divergence, DevoGraphing |
YouTube |
Twitter |
|
17 |
Bradly, Dick, Sushmanth |
[27] DevoML/DL, Differentiation Genomics, Constructive Connectomics |
YouTube |
Twitter |
|
24 |
Assorted |
[28] DevoLearn/DevoGraph, Genomics of Differentiation II, Recent Papers |
YouTube |
Twitter |
|
31 |
Bradly, Sushmanth, Lukas |
[29] DevoLearn, Comsol Modeling, Molecular Bio of Differentiation, G-P Maps |
YouTube |
Twitter |
| August |
7 |
|
No meeting |
|
|
|
14 |
Bradly, Sushmanth |
[30] DevoLearn, DevoGraph, Minimal Cells, Molecular Order, Differentiation |
YouTube |
Twitter |
|
21 |
Bradly, Sushmanth |
[31] DevoLearn and Docs, Temporal Synthetic Bio, Collective Cell Mechanics |
YouTube |
Twitter |
|
28 |
Bradly, Sushmanth, Himanshu |
[32] DevoSAM, DevTOGL, Molecular Order to Differentiation, Genetic Mosaics |
YouTube |
Twitter |
| September |
4 |
|
No meeting |
|
|
|
11 |
Bradly, Sushmanth |
[33] DevoSAM, 2D and 3D Gastruloids, Models of Differentiation |
YouTube |
Twitter |
|
18 |
|
No meeting |
|
|
|
25 |
Bradly, Sushmanth |
[34] Hacktoberfest plans, Enumerating human cell types, Morphogenetic flows |
YouTube |
Twitter |
| October |
2 |
Bradly, Sushmanth |
[35] DevoLearn Hacktober, Basal Cognition, Physiomics via Multiphysics |
YouTube |
Twitter |
|
9 |
|
Happy Indigenous People's Day! |
|
|
|
16 |
Bradly |
[36] Epithelial Diversity, Organoid States, Life and Natural Selection |
YouTube |
Twitter |
|
23 |
Bradly, Sushmanth |
[37] DevoCell/CellSAM, Intermediate Filament Nets, Material Morphogenesis |
YouTube |
Twitter |
|
30 |
Bradly |
[38] Liquid Crystal Epithelia, Complexity, and Configurational Modeling |
YouTube |
Twitter |
| November |
6 |
|
No meeting |
|
|
|
13 |
Bradly, Susan, Morgan |
[39] DevoPhysical Modeling, Apical Constriction, A Theory of Plasticity |
YouTube |
Twitter |
|
20 |
|
DevoWorm @ OpenWorm Annual Meeting |
YouTube |
|
|
27 |
Bradly, Susan |
[40] Morphogenetic Physics, Modeling the Nucleus |
YouTube |
Twitter |
| December |
4 |
Bradly |
[41] Hypergraphs in Development, Morphogenetic Complexity, Morphogens |
YouTube |
Twitter |
|
11 |
Bradly |
[42] ABM/RL for embryos, Force maps and virtual embryos, 1st-mover dynamics |
YouTube |
Mastodon |
|
18 |
Bradly, Dick, Morgan |
[43] Cell Atlases, Differentiation Trees: Brain, EIT Developmental Imaging |
YouTube |
Mastodon |
|
25 |
|
Happy Holidays! |
|
|
| 2024 |
|
|
|
|
|
| January |
1 |
|
Happy Holidays! |
|
|
|
8 |
Bradly, Vahid |
[1] Biophysics collaborations, Cell Censuses, the Edge of Biological Chaos |
YouTube |
Mastodon |
|
15 |
Bradly, Dick, Vahid |
[2] Ray Generation, Developmental ANNs, and Canalization Functions |
YouTube |
Mastodon |
|
22 |
Bradly, Vahid |
[3] C. elegans Behavioral Development Timeline, Spatial Cell Proliferation |
YouTube |
Mastodon |
|
29 |
Bradly |
[4] Morphogenesis in Sheets and Tangles, Reciprocal Causality/Cybernetics |
YouTube |
Mastodon |
| February |
5 |
Bradly |
[5] Lineage-independent Differentiation, 3-D Soft Streaming and Biophysics |
YouTube |
Mastodon |
|
12 |
Bradly, Vahid |
[6] Darwin Day, Larval Locomotion, Open Systems, Intracellular Twisters |
YouTube |
Mastodon |
|
19 |
Bradly, Vahid |
[7] Developmental Connectomes, Growth-Tension-Curvature, A-life Inquiries |
YouTube |
Mastodon |
|
26 |
Bradly, Vahid |
[8] Open-source Community Resources, Rule 30 and Biological Plausibility |
YouTube |
Mastodon |
| March |
4 |
Vahid, Hussain |
[9] Image Reconstruction, OW Adaptive Data Fusion, BioFoundation Models |
YouTube |
Mastodon |
|
11 |
|
Janelia 4D Cellular Physiology Conference |
|
|
|
18 |
Hussain, Bradly, Pahki |
[10] OpenAndClosed Worm, Neural Graphs, MetaWorm, Multi-phase Modeling |
YouTube |
Mastodon |
|
25 |
|
Society for Mathematical Biology Cell and Developmental Biology Festival |
|
|
| April |
1 |
Bradly, Mehul, Pakhi |
[11] Update on Hypergraph and TDA-NDP Projects |
YouTube |
Mastodon |
|
8 |
Bradly |
[12] 10th Anniversary precis, Predicting Differentiation, Single-cell Morphogenesis |
YouTube |
Mastodon |
|
15 |
Bradly, Susan |
[13] 10 Years of DevoWorm, 3-D and Language Models, Soft Materials and Symmetries |
YouTube |
Mastodon |
|
22 |
Bradly, Morgan |
[14] Biological Models in Tissue Forge, Open-source Developmental Machine Learning |
YouTube |
Mastodon |
|
29 |
Bradly, Harshit |
[15] Edge-based GNNs for flows, Biophysics as Non-physics, Complexity, TOMO-Seq |
YouTube |
Mastodon |
| May |
6 |
|
Advanced Computational Workshop: Simulations and Visualization of a Minimal Bacterial Cell |
|
|
|
13 |
Bradly, Morgan |
[16] Organoid modeling, DevoWorm datasets, Minimal cell modeling (bac, computation) |
YouTube |
Mastodon |
|
20 |
Bradly, Hussain |
[17] GSoC Community, Perlin Noise and Janus Particles, Swarmalators |
YouTube |
Mastodon |
|
27 |
Bradly |
[18] GSoC Coding Schedule, multiphysics models in 3D, Protein Interactions |
YouTube |
Mastodon |
| June |
3 |
Mehul, Hussain, Bradly |
[19] Graphs for Development, Cancer Physics, Limits of Biomolecular Simulation |
YouTube |
Mastodon |
|
10 |
Pakhi, Bradly |
[20] Open-source Biophysics, NDPs and C. elegans, language models and gene function |
YouTube |
Mastodon |
|
17 |
Pakhi, Bradly |
[21] Exploring a larval C. elegans dataset, cell cycle and ciliated morphogenesis |
YouTube |
Mastodon |
|
24 |
Bradly |
[22] GNN Growth, Discovering Neural Policies, Optimal Transport, and Soft Materials |
YouTube |
Mastodon |
| July |
1 |
Pakhi, Bradly |
[23] Training an NDP, building cells, CT grand challenge, spectral embryos |
YouTube |
Mastodon |
|
8 |
Mehul, Pakhi, Bradly |
[24] Hypergraphs in development, Non-random embryo networks, Speed of cell division |
YouTube |
Mastodon |
|
15 |
Mehul, Bradly |
[25] Hypergraphs and Hypercells, GECCO Workshops, New Directions in Lineage Trees |
YouTube |
Mastodon |
|
22 |
Bradly |
[26] Limb Bud vectors and scalars, Molecular Models of Differentiation, Alife 2024 |
YouTube |
Mastodon |
|
29 |
Bradly |
[27] Secondary larval datasets, transcriptional budgeting, generative development |
YouTube |
Mastodon |
| August |
5 |
Susan, Bradly |
[28] CompuCell modeling, Alternative Splicings in C. elegans, Morphogenetic Models |
YouTube |
Mastodon |
|
12 |
Bradly |
[29] NDP-D-GNNs, Biophysical Modeling, Developmental Connectomes |
YouTube |
Mastodon |
|
19 |
Bradly, Mehul |
[30] Hypernetwork connectivity, subnetwork structure, topological separation (cuts) |
YouTube |
Mastodon |
|
26 |
Bradly, Mehul |
[31] Node-layer duality, Physically-interacting cells, Interactomes in C. elegans |
YouTube |
Mastodon |
| September |
2 |
Bradly |
[32] DevoWorm Update 2024 |
YouTube |
|
|
9 |
|
No meeting |
|
|
|
16 |
Bradly, Pakhi |
[33] Finishing GSoC, Developmental theory (comparative approaches and limits) |
YouTube |
Mastodon |
|
23 |
Assorted |
[34] Growing Networks, Hypernetworks, Tensegrity/Multiphysics, AI for Cell Modeling |
YouTube |
Mastodon |
|
30 |
Bradly |
[35] C. elegans Neurophysiological tradeoffs, E.coli and Single-cell Psychophysics |
YouTube |
Mastodon |
| October |
7 |
Bradly |
[36] Nobel Prize for miRNAs in C. elegans, Physics and Curvatures in Morphogenesis |
YouTube |
Mastodon |
|
14 |
|
Happy Indigenous People's Day! |
|
|
|
21 |
Bradly |
[37] Growing embryo networks, the RNA milieu, World models for C. elegans |
YouTube |
Mastodon |
|
28 |
Bradly |
[38] Holistic/Emergentist Views of Development, Biophysics and Multi-scale Modeling |
YouTube |
Mastodon |
| November |
4 |
Bradly |
[39] Bottlenecks to Faster Biological Progress, Criticality of Actinmyosin Networks |
YouTube |
Mastodon |
|
11 |
|
NIH NeuroAI Workshop |
|
|
|
18 |
Bradly |
[40] OW Annual Meeting Preview, Biomechanochemical Models of Tissue Differentiation |
YouTube |
Mastodon |
|
25 |
Bradly |
[41] OpenWorm.ai/Connectome Toolbox, Developmental Trajectories as Vector Spaces |
YouTube |
Mastodon |
| December |
2 |
Bradly |
[42] COMSOL Sims, Ribosomal OS, Dynamics of Founder Cells and Early Lineages |
YouTube |
Mastodon |
|
9 |
Bradly |
[43] Reverse Engineering C. elegans, Input-Output functions, Dev/Tissue Networks |
YouTube |
Mastodon |
|
16 |
Susan |
[44] Biotensegrity for Tissue Morphogenesis |
YouTube |
|
|
23 |
|
Happy Holidays! |
|
|
|
30 |
|
Problem-solving lectures |
YouTube: Game-theoretic development, YouTube: Generative Divergent Integration |
|
| 2025 |
|
|
|
|
|
| January |
6 |
Bradly |
[1] Epithelial quasi-tensegrity, robustness and nonlinearity in cell asymmetry |
YouTube |
Mastodon |
|
13 |
Bradly |
[2] Developmental Hypergraphs, BAAI Worm (Brain-Body-Environment) |
YouTube |
Mastodon |
|
20 |
Bradly |
[3] Parallel Network Structure in C. elegans Connectome, Benchmarking C. elegans |
YouTube |
Mastodon |
|
27 |
Bradly |
[4] XOR motifs in Connectomes, Tissues and Organs as Evo-Devo Transitions |
YouTube |
Mastodon |
| February |
3 |
Bradly |
[5] Patterning codes in C. elegans, ANNs vs. BNNs, Feathers and Scales |
YouTube |
Mastodon |
|
10 |
Bradly |
[6] Evolution Beats ANNs, Field-mediated Bioloelectric Pre-patterning |
YouTube |
Mastodon |
|
17 |
Mehul, Bradly |
[7] DevoHyperGraph Metrics and Methods, Lineage and Asymmetries and Tissue Growth |
YouTube |
Mastodon |
|
24 |
Bradly, Soham |
[8] Hypergraphs as Renormalized Graphs, Cells as a Cascade of Biological Machines |
YouTube |
Mastodon |
| March |
3 |
Bradly |
[9] TopoNets(Structure in ANNs), Synchrotron Imaging in Molluscs |
YouTube |
Mastodon |
|
10 |
Bradly |
[10] Convergent Evo-Devo (carcinization), Vertex Biology/Tri-junctions, DevoGraph |
YouTube |
Mastodon |
|
17 |
Bradly, Assorted |
[11] Synticial Biophysics, Visualizing Developmental Graphs, Cybernetic Flocks |
YouTube |
Mastodon |
|
24 |
|
NetSci X 2025 Conference |
|
|
|
31 |
Jayadratha, Lalith, Mehul, Soham |
[12] Discrete and Continuous Hypergraphs, 4-D Hypergraphs, Visualizing Hypergraphs |
YouTube |
Mastodon |
| April |
7 |
Bradly |
[13] Biophysical Size Limits to the Cell, Tissue-like Structures in Archaebacteria |
YouTube |
Mastodon |
|
14 |
Lalith, Bradly |
[14] Developmental Hypergraphs Methods, Developmental Flows, Networks in Tissues |
YouTube |
Mastodon |
|
21 |
Lalith, Bradly |
[15] Hypergraph Modeling Methods and Applications to Developmental Systems |
YouTube |
Mastodon |
|
28 |
Bradly |
[16] Cell Division Phase Angle, Low Reynolds Number Swimming |
YouTube |
Mastodon |
| May |
5 |
Bradly |
[17] Connectomic Models and the Phase Transitions of Cellular Evolution |
YouTube |
Mastodon |
|
12 |
|
No meeting |
|
|
|
19 |
Bradly |
[18] Simulating Plausible Movement, Open-source Software, Epithelial Sheets |
YouTube |
Mastodon |
|
26 |
Bradly, Lalith |
[19] Epithelial Sheet Physics, Bioelectrical Differentiation, DevHyperGraph |
YouTube |
Mastodon |
| June |
2 |
|
NetSci 2025 |
|
Bluesky |
|
9 |
Bradly |
[20] Challenges in Education, Dev. Connectome datasets, Connectomes amd Behavior |
YouTube |
Mastodon |
|
16 |
|
No meeting |
|
|
|
23 |
Bradly |
[21] Lineage/Differentiation Codes, Vasculogenesis, Tissue Engineering + Evolution |
YouTube |
Mastodon |
|
30 |
|
25th International Worm Meeting |
Worm Show 2025 |
|
| July |
7 |
Bradly, Lalith, Dick |
[22] Reticulating Lineage Trees/Hypergraphs, C. elegans Syncytium, Nematic Order |
YouTube |
Mastodon |
|
14 |
Bradly |
[23] Syncytial Trees, Muscle Growth and Tension, Connectome Datasets, Lifelike Sims |
YouTube |
Mastodon |
|
21 |
Bradly, Jayadratha, Hussain |
[24] Larval Synaptogenesis, Early Life Simulations, Possible Shapes of Lifeforms |
YouTube |
Mastodon |
|
28 |
Bradly, Hussain |
[25] Shapes of Life, Pros and Cons of Organismal Sims, Developmental Mechanobiology |
YouTube |
Mastodon |
| August |
4 |
Bradly, Dick |
[26] Evolving Intelligence, Peptide Modeling, Origins of EvoDevo |
YouTube |
Mastodon |
|
11 |
Bradly |
[27] Lagrangian and Eulerian Models of the Embryo: Dynamics and Tensegrity |
YouTube |
Mastodon |
|
18 |
Bradly |
[28] Minimal Cell Models, Chemotactic Behaviors, and Thermodynamic Spaces |
YouTube |
Mastodon |
|
25 |
|
No meeting |
|
|
| September |
1 |
Bradly |
[29] Completion of GSoC and towards a Neurite-based Developmental Connectome |
YouTube |
Mastodon |
|
8 |
Bradly |
[30] Mathematical Modeling of Cell Deformation, Biotensegrity and Superstability |
YouTube |
Mastodon |
|
15 |
Bradly |
[31] Multiphysics for Organogenesis, Phase Transitions for Information Processing |
YouTube |
Mastodon |
|
22 |
Bradly |
[32] Developmental Biology in CompuCell3D, Vectorcosm Artificial Life platform |
YouTube |
Mastodon |
|
29 |
|
No meeting |
|
|
| October |
6 |
|
Artificial Life (Alife) 2025 |
|
|
|
13 |
Bradly |
[33] Overview of Alife 2025, Biophysics of Vortices and Microorganismal Motility |
YouTube |
Mastodon |
|
20 |
Bradly, Susan |
[34] A Model of Biotensegrity Networks, Game Dynamics from "Laws of the Game" |
YouTube |
Mastodon |
|
27 |
Bradly |
[35] Spatio-Lineage Hypergraphs preview, Gastruloids and Stochastic Gene Expression |
YouTube |
Mastodon |
| November |
3 |
Bradly |
[36] Biophysics of Very Fast Movements, Building Emergent Biotectonic Structures |
YouTube |
Mastodon |
|
10 |
Bradly |
[37] Epithelial Mechanics, Macromolecular Crowding, Archaeal Internal Compartments |
YouTube |
Mastodon |
|
17 |
Bradly |
[38] Classification of Cell-Cell Junctions, Epithelium as a Complex Adaptive System |
YouTube |
Mastodon |
|
24 |
Bradly |
[39] Art of the Soluable and D'Arcy Thompson (history of physical development |
YouTube |
Mastodon |
| December |
1 |
Bradly |
[40] The power of a good model organism and community involvement (C. elegans) |
YouTube |
Mastodon |
|
6 |
|
Complex Networks 2025 |
|
|
|
15 |
Bradly |
[41] Developmental Dynamics: cell differentiation and oscillatory entrainment |
YouTube |
Mastodon |
|
22 |
Bradly |
[42] Neural architectures on curved, folded, and layered sheets without development |
YouTube |
Mastodon |
|
29 |
|
Happy Holidays! |
|
|
| 2026 |
|
|
|
|
|
| January |
5 |
Bradly |
[1] A New Year, Neutral Theory and Function Concepts, Multiphysics and Materials |
YouTube |
Mastodon |
|
12 |
Bradly |
[2] Tensegrity constraints and form finding methods, applications to soft systems |
YouTube |
Mastodon |
|
19 |
Susan, Shreyas, Barshan |
[3] Biotensegrities, Eigenmovements (Markovian), and Dynamical Connectomes (ODEs) |
YouTube |
Mastodon |
|
26 |
Susan, Barshan |
[4] Microgravity Effects on the Cell, Eigenvalues of Cell Motility, Condensates |
YouTube |
Mastodon |
| February |
2 |
Bradly, Kirill, Shreyas |
[5] Sentience, Cell Modeling in C. elegans, Neural ODEs for Connectome Modeling |
YouTube |
Mastodon |
|
9 |
Bradly, Barshan, Shreyas |
[6] Developmental Networks for Graph NNs and Tensegrity, Mathematics of Tensegrity |
YouTube |
Mastodon |
|
16 |
Bradly, Hussain, Shreyas |
[7] Laws of Game-theoretic Biology, ODEs and Validating D-GNNs, Lagrangian Embryos |
YouTube |
Mastodon |
|
23 |
Bradly, Utkarsh |
[8] Diffusion Network Models, Mechanobiology and Multiphysics, Tensegrity Sims |
YouTube |
Mastodon |
| March |
2 |
Bradly, Utkarsh, Barshan |
[9] Hyperbolic and Multi-Network Biological Models |
YouTube |
Mastodon |
|
9 |
Bradly, Utkarsh, Barshan |
[9] Hyperbolic and Multi-Network Biological Models |
YouTube |
Mastodon |
|
16 |
Utkarsh, Barshan, Shreyas |
[10] GSoC preparations, Spherical Biology, Tensegrity, and Simulations |
YouTube |
Mastodon |
|
23 |
Utkarsh, Barshan, Asha |
[11] Spatio-temporal AI and Graph Learning, ABMs to GNNs, Dynamic Hypergraphs |
YouTube |
Mastodon |
|
30 |
Bradly |
[12] Embodied Sensrimotor Connectomes, Living Materials for Artificial Tissues |
YouTube |
Mastodon |