Randi, Francesco; Sharma, Anuj; Dvali, Sophie; Leifer, Andrew M. (2024) Neural signal propagation atlas of Caenorhabditis elegans (Version 0.240930.1859) [Data set]. DANDI archive. https://doi.org/10.48324/dandi.001075/0.240930.1859

Install Conda on your machine. Install git and clone the example notebook repository:

conda install git
git clone https://github.com/dandi/example-notebooks.git

Then create a specific environment for this notebook using:

conda env create --file example-notebooks/001075/001075_notebook_environment.yml

Then activate the environment:

conda activate leifer_notebooks_created_8_29_2024

Finally, start Jupyter:

jupyter notebook

And select the notebook 001075_paper_figure_1d.ipynb from the file explorer in the browser.

If interested in creating your own plots, refer to the code in utils_001075 for how to handle the data streams.

Note that all timing information is aligned to the NeuroPAL imaging system.

• Dataset: https://dandiarchive.org/dandiset/001075/0.240930.1859
• Original publication: Neural signal propagation atlas of Caenorhabditis elegans
• Visualize (Neurosift)
  • Note: the files are split by 'imaging' (raw) and 'segmentation' (processed). To view both, select a combined view for the same session: example.
• NWB file basics
• How to read NWB files
• Data analysis with NWB files