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remove use of hasattr when isinstance can be used

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#2490 In cogent3/cogent3;

· GavinHuttley opened on Oct 10, 2025

find systematic type hinting discrepancies

Status: Open.

#2480 In cogent3/cogent3;

· GavinHuttley opened on Oct 3, 2025

Document the new canned dataset capabilities

Status: Open.

#2306 In cogent3/cogent3;

· GavinHuttley opened on May 8, 2025

Move sequence collection info data to storage backend

Status: Open.

#2298 In cogent3/cogent3;

· GavinHuttley opened on May 3, 2025

developer docs for plugins

Status: Open.

#2294 In cogent3/cogent3;

· GavinHuttley opened on Apr 29, 2025

DOC docs for new plugins

Status: Open.

#2292 In cogent3/cogent3;

· GavinHuttley opened on Apr 29, 2025

ENH: refactor .get_motif_probs() to using array operations

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#2216 In cogent3/cogent3;

· GavinHuttley opened on Feb 20, 2025

ENH: improve performance of .counts_per_seq() method

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#2215 In cogent3/cogent3;

· GavinHuttley opened on Feb 20, 2025

ENH: new_alignment.counts_per_pos should use a numba decorated function

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#2139 In cogent3/cogent3;

· KatherineCaley opened on Nov 26, 2024

ENH: add set_repr_policy() method to Sequence class

Status: Open.

#2015 In cogent3/cogent3;

· GavinHuttley opened on Sep 5, 2024

·  

2024 Q4 release

improve app docstring generation for decorated functions

Status: Open.

#2004 In cogent3/cogent3;

· GavinHuttley opened on Aug 27, 2024

·  

2024 Q3 release

Cannot get tree with lengths as ENS for a rate heterogeneous model

Status: Open.

#1925 In cogent3/cogent3;

· GavinHuttley opened on Jun 26, 2024