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Fix a v. subtle issue in up/down bond handling in SMILES. It's quite …#866

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egonw merged 1 commit intomasterfrom
cistrans-bug
Jun 3, 2022
Merged

Fix a v. subtle issue in up/down bond handling in SMILES. It's quite …#866
egonw merged 1 commit intomasterfrom
cistrans-bug

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@johnmay
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@johnmay johnmay commented Jun 3, 2022

…a corner case but it turns out some toolkits do write records like this (found one in ChEMBL). Only happens if the bond is written on the ring open (unusual but ok) and then multiple directional bonds are written. BEAM does more in recent releases to check/ignore innconsitent behaviour allready but we can add the correct check in the BEAM2CDK conversion.

…a corner case but it turns out some toolkits do write records like this (found one in ChEMBL). Only happens if the bond is written on the ring open (unusual but ok) and then multiple directional bonds are written. BEAM does more in recent releases to check/ignore innconsitent behaviour allready but we can add the correct check in the BEAM2CDK conversion.
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sonarqubecloud bot commented Jun 3, 2022

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

100.0% 100.0% Coverage
0.0% 0.0% Duplication

@egonw egonw merged commit 7de81d8 into master Jun 3, 2022
@johnmay johnmay deleted the cistrans-bug branch October 20, 2024 14:13
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2 participants