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Use SMARTS in XLogP instead of MCS UIT#656

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egonw merged 1 commit intomasterfrom
patch/xlog-cleanup
Feb 9, 2022
Merged

Use SMARTS in XLogP instead of MCS UIT#656
egonw merged 1 commit intomasterfrom
patch/xlog-cleanup

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@johnmay johnmay commented Jul 18, 2020

There are better LogP predictors (e.g. ALogP and JPLogP) - on the one hand I think hmm this could be useful to preserve for prosperity. However often the methods have very obvious coding bugs/misunderstandings.

Like here... the alpha amino pattern expected by the tests doesn't match proline.
Also works on explicit hydrogens - sigh. Anyways tests are parsing but that doesn't mean much so want to read the XLogP paper to see how faithful this is to the actual description.

@egonw egonw marked this pull request as draft December 9, 2020 06:11
…s now clearer what each

pattern is and should run slightly faster since UIT is an MCS finding alogrithm instead of
a simple substructure match.
@johnmay johnmay force-pushed the patch/xlog-cleanup branch from 9f1c7d2 to de8e6a8 Compare February 5, 2022 13:12
@johnmay johnmay marked this pull request as ready for review February 5, 2022 13:13
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johnmay commented Feb 5, 2022

Providing all checks okay - this is good to go. I never had time to lookup the paper but it is now cleaner

@johnmay johnmay changed the title WIP Use SMARTS in XLogP instead of MCS UIT Feb 5, 2022
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sonarqubecloud bot commented Feb 5, 2022

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 1 Code Smell

0.0% 0.0% Coverage
0.0% 0.0% Duplication

@egonw egonw merged commit 30738c7 into master Feb 9, 2022
@johnmay johnmay deleted the patch/xlog-cleanup branch February 9, 2022 15:04
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2 participants