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Handle Link Nodes in CXSMILES (Ring flags now set when reading from SMILES)#1232

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egonw merged 8 commits intomainfrom
link-nodes
Sep 19, 2025
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Handle Link Nodes in CXSMILES (Ring flags now set when reading from SMILES)#1232
egonw merged 8 commits intomainfrom
link-nodes

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@johnmay
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@johnmay johnmay commented Sep 16, 2025

In midst of writing a blog post on repeat groups I realised we don't handle link nodes CXSMILES. Quite east to handle just treated that as Sgroups.

It may be useful to add the optimisation going the other way as well.

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johnmay commented Sep 17, 2025

No idea why the forcefield is failing, will take a look

…aring.

Seems buggy but we have better ways to configure MMFF now
@johnmay johnmay changed the title Handle Link Nodes in CXSMILES Handle Link Nodes in CXSMILES (Ring flags now set when reading from SMILES) Sep 17, 2025
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johnmay commented Sep 18, 2025

Go to go

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egonw commented Sep 18, 2025

Go to go

first thing tomorrow

@egonw egonw merged commit a48fb65 into main Sep 19, 2025
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egonw commented Sep 19, 2025

first thing tomorrow

Sadly, the first thing today was my webbrowser crashing each time I tried to open a new webpage

@johnmay johnmay deleted the link-nodes branch March 3, 2026 13:53
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2 participants