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Setup JaCoCo correctly and use latest version of cdk-build-utils.
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pom.xml

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</modules>
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<properties>
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<argLine></argLine>
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<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
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<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
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</properties>
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<configuration>
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<!-- prevent the annoying ForkedBooter process from stealing
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window focus on Mac OS -->
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<argLine>-Djava.awt.headless=true -Dcdk.logging.level=ERROR</argLine>
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<argLine>${argLine} -Djava.awt.headless=true -Dcdk.logging.level=ERROR</argLine>
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<excludes>
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<!-- not a test class -->
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<exclude>**/TestMoleculeFactory.java</exclude>
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<tagletArtifact>
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<groupId>org.openscience.cdk</groupId>
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<artifactId>cdk-build-utils</artifactId>
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<version>1.0.2.7</version>
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<version>1.0.2.8</version>
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</tagletArtifact>
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<failOnError>false</failOnError>
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<doctitle>Chemistry Development Kit ${project.version} API</doctitle>

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