Correct handling of the error, allowing it to be picked up by error handlers (while still throwing the Exception in STRICT mode)

egonw · egonw · commit 547b028e1765 · 2019-03-15T17:23:13.000+01:00
diff --git a/storage/ctab/src/main/java/org/openscience/cdk/io/MDLV2000Reader.java b/storage/ctab/src/main/java/org/openscience/cdk/io/MDLV2000Reader.java
@@ -1321,13 +1321,13 @@ private IAtom createAtom(String symbol, IChemObjectBuilder builder, int lineNum)
             return atom;
         }
         if (symbol.equals("D") && interpretHydrogenIsotopes.isSet()) {
-            if (mode == Mode.STRICT) throw new CDKException("invalid symbol: " + symbol);
+            handleError("invalid symbol: " + symbol, lineNum, 31, 33);
             IAtom atom = builder.newInstance(IAtom.class, "H");
             atom.setMassNumber(2);
             return atom;
         }
         if (symbol.equals("T") && interpretHydrogenIsotopes.isSet()) {
-            if (mode == Mode.STRICT) throw new CDKException("invalid symbol: " + symbol);
+            handleError("invalid symbol: " + symbol, lineNum, 31, 33);
             IAtom atom = builder.newInstance(IAtom.class, "H");
             atom.setMassNumber(3);
             return atom;
