The .specify directory was created when spec-kit used itself for development and is gitignored. Code and docs incorrectly referenced .specify/scripts/ when actual scripts live in scripts/ at repo root.

Code changes:

• ensure_executable_scripts(): Changed lookup path from .specify/scripts/ to scripts/
• Worktree notice panel: Fixed configure script path shown to users from .specify/scripts/configure-worktree.{sh,ps1} to scripts/configure-worktree.{sh,ps1}

Documentation changes:

• installation.md: Updated script directory reference
• upgrade.md: Corrected paths for scripts/, templates/, and memory/ directories (all at repo root, not under .specify/)

# Before
scripts_root = project_path / ".specify" / "scripts"
configure_script = ".specify/scripts/bash/configure-worktree.sh"

# After  
scripts_root = project_path / "scripts"
configure_script = "scripts/bash/configure-worktree.sh"

💬 We'd love your input! Share your thoughts on Copilot coding agent in our 2 minute survey.