Search results

Missing libm linkage causes undefined symbol errors

Status: Open.

#5137 In biopython/biopython;

· BwL1289 opened on Jan 9, 2026

MMCif2Dict doesn't parse all keys in extremely large structures

Status: Open.

#5136 In biopython/biopython;

· jonahZoldan-mfi opened on Jan 8, 2026

Incompatible with NumPy 2.4

Status: Open.

#5135 In biopython/biopython;

· piecole opened on Jan 7, 2026

PDBParser is not thread-safe when used in ThreadPoolExecutor

Status: Open.

#5131 In biopython/biopython;

· yiyabo opened on Jan 5, 2026

Why does read_PIC_seq give different distances and angles for each residue?

Status: Open.

#5119 In biopython/biopython;

· HakonOnco opened on Dec 8, 2025

Proposal: Optional ProteinSeq class for protein sequences

Status: Open.

#5115 In biopython/biopython;

· harisj739 opened on Nov 30, 2025

IC_residue's get_angle function gives different results for psi and "N:CA:C:1N"

Status: Open.

#5113 In biopython/biopython;

· HakonOnco opened on Nov 28, 2025

[CVE-2025-68463] <code>Bio.Entrez.DataHandler</code>, <code>Bio.Entrez.read</code>, <code>Bio.Entrez.parse</code> are vulnerable to XXE and SSRF

Status: Open.

#5109 In biopython/biopython;

· hartwork opened on Nov 25, 2025

GenBank multi-line qualifier value parsed incorrectly in specific cases

Status: Open.

#5101 In biopython/biopython;

· BioGavin opened on Nov 14, 2025

Proposal: Integrate advanced peptide descriptors into Bio.SeqUtils

Status: Open.

#5100 In biopython/biopython;

· flyfir248 opened on Nov 7, 2025

FoldX PositionScan: "Specified residue not found"

Status: Open.

#5096 In biopython/biopython;

· LLG00 opened on Oct 29, 2025

Warning: Package 'Bio.Align.substitution_matrices' is absent from the <code>packages</code> configuration.

Status: Open.

#5092 In biopython/biopython;

· peterjc opened on Oct 28, 2025