- Review of alignment and SNP calling algorithms for next-generation sequencing data (Mielczarek, 2015) - Genotype and SNP calling from next-generation sequencing data (Nielson, 2011) - Best practices for evaluating single nucleotide variant calling methods for microbial genomics (Olson, 2015) - A survey of tools for variant analysis of next-generation genome sequencing data (Pabinger, 2012)