[ENH] Render code blocks with language "tsv" as tables#1794
Conversation
This comment was marked as outdated.
This comment was marked as outdated.
|
that's way quicker than anything I would have done I can try tweaking this to see if I can make it work |
|
FWIW I think this is not an |
that's fair |
75f1968 to
bc86f79
Compare
0f1b9fd to
7f33895
Compare
effigies
left a comment
There was a problem hiding this comment.
Links and screenshots of all affected locations.
| ```tsv | ||
| session_id acq_time systolic_blood_pressure | ||
| ses-predrug 2009-06-15T13:45:30 120 | ||
| ses-postdrug 2009-06-16T13:45:30 100 |
There was a problem hiding this comment.
| ```tsv | ||
| filename acq_time | ||
| func/sub-control01_task-nback_bold.nii.gz 1877-06-15T13:45:30 | ||
| func/sub-control01_task-motor_bold.nii.gz 1877-06-15T13:55:33 |
There was a problem hiding this comment.
| ```tsv | ||
| session_id acq_time systolic_blood_pressure | ||
| ses-predrug 2009-06-15T13:45:30 120 | ||
| ses-postdrug 2009-06-16T13:45:30 100 |
There was a problem hiding this comment.
| ```tsv | ||
| trial response response_time stim_file | ||
| congruent red 1.435 images/word-red_color-red.jpg | ||
| incongruent red 1.739 images/word-red_color-blue.jpg |
| ```tsv | ||
| volume_type | ||
| control | ||
| label |
There was a problem hiding this comment.
| ```tsv | ||
| 34 110 0 | ||
| 44 112 0 | ||
| 23 100 1 | ||
| ``` |
There was a problem hiding this comment.
| ```tsv | ||
| onset duration trial_type response_time stim_file channel annots | ||
| 1.23 0.65 start 1.435 images/red_square.jpg n/a n/a | ||
| 5.65 0.65 stop 1.739 images/blue_square.jpg n/a n/a |
There was a problem hiding this comment.
| ```tsv | ||
| participant_id age sex handedness group | ||
| sub-01 34 M right read | ||
| sub-02 12 F right write | ||
| sub-03 33 F n/a read | ||
| ``` |
There was a problem hiding this comment.
| ```tsv | ||
| sample_id participant_id sample_type derived_from | ||
| sample-01 sub-01 tissue n/a | ||
| sample-02 sub-01 tissue sample-01 | ||
| sample-03 sub-01 tissue sample-01 | ||
| sample-04 sub-02 tissue n/a | ||
| sample-05 sub-02 tissue n/a | ||
| ``` |
There was a problem hiding this comment.
| ```tsv | ||
| time plasma_radioactivity whole_blood_radioactivity metabolite_parent_fraction metabolite_polar_fraction | ||
| 0 0 0 1 0 | ||
| 145 43.31 33.79 0.5749 0.1336 | ||
| 292 48.96 37.42 0.3149 0.2746 | ||
| 602 39.84 32.05 0.1469 0.3548 | ||
| 1248 37.38 31.52 0.073 0.444 | ||
| 1785 36.40 28.83 0.078 0.429 | ||
| 2390 33.13 26.32 0.061 0.453 | ||
| 3059 30.83 25.22 0.049 0.473 | ||
| 4196 27.28 21.98 0.036 0.503 | ||
| 5407 22.70 19.49 0.032 0.523 | ||
| 7193 19.71 15.70 0.02 0.559 | ||
| ``` |
There was a problem hiding this comment.
yarikoptic
left a comment
There was a problem hiding this comment.
I guess original description should get this sentence crossed-out/removed?
It's not working 100% for me, but I've maxed out my time on this. Pushed to upstream so others can take it up or open PRs against it.
I have tested a cut on linux producing tab separated representation somehow, so as to me it is everything anyone could hope for.
Well done @effigies . Thanks for posting all previews!
| custom_fences: | ||
| - name: tsv | ||
| class: tsv | ||
| format: !!python/name:bidsschematools.render.tsv.fence |
Remi-Gau
left a comment
There was a problem hiding this comment.
Heck yes!!!
Let's go (just because of the sheer number of things this closes)
|
Rendered: https://bids-specification--1794.org.readthedocs.build/en/1794/
This is another go at #644 along the lines of #1783 (comment).
It's not working 100% for me, but I've maxed out my time on this. Pushed to upstream so others can take it up or open PRs against it.The code for this does not need to live in bidsschematools, but that's the quickest way to get something into the import namespace.
cc @Remi-Gau