PyKappa is a Python package for working with rule-based models. It supports simulation and analysis of a wide variety of systems whose individual components interact as described by rules that transform these components in specified ways and at specified rates. See our website pykappa.org for a tutorial, examples, and documentation.

Developer requirements can be installed via:

pip install -e ".[dev]"

To run correctness tests, run pytest. Running ./tests/cpu-profiles/run_profiler.sh will CPU-profile predefined Kappa models and write the results to tests/cpu-profiles/results. We use the Black code formatter, which can be run as black .