added equation

bbest · bbest · commit 4c33f8ad0d50 · 2014-08-01T10:35:26.000-07:00
diff --git a/rmarkdown_example/test.Rmd b/rmarkdown_example/test.Rmd
@@ -10,10 +10,26 @@ bibliography: test.bib
 csl: apa.csl
 ---
 
-## Introduction
+## Introduction {-}
 
 The Ocean Health Index [@halpern_index_2012; @selig_assessing_2013] derives most of its pressures from Halpern et al. [-@halpern_global_2008].
 
+## Food Provision: Fisheries
+
+Amount of sustainable wild-caught seafood compared to the max sustainable
+
+$$
+x_{FIS} =  (\prod_{g=1}^{6} SS_{i,g}^{C_{i,g}})^\frac{1}{\sum{C_{i,g}}}
+$$
+
+Variables:
+
+- $SS$: stock status score, based on B/Bmsy and an underharvest penalty adjustment
+- $C$: total catch
+- $i$: OHI reporting region
+- $g$: level of taxonomic grouping (ISSCAAP)</small>
+
+
 ## Default Rmarkdown
 
 This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see <http://rmarkdown.rstudio.com>.
diff --git a/rmarkdown_example/test.html b/rmarkdown_example/test.html
@@ -60,16 +60,31 @@ <h4 class="date"><em>August 1, 2014</em></h4>
 
 <div id="TOC">
 <ul>
-<li><a href="#introduction"><span class="toc-section-number">0.1</span> Introduction</a></li>
+<li><a href="#introduction">Introduction</a></li>
+<li><a href="#food-provision-fisheries"><span class="toc-section-number">0.1</span> Food Provision: Fisheries</a></li>
 <li><a href="#default-rmarkdown"><span class="toc-section-number">0.2</span> Default Rmarkdown</a></li>
 <li><a href="#references">References</a></li>
 </ul>
 </div>
 
-<div id="introduction" class="section level2">
-<h2><span class="header-section-number">0.1</span> Introduction</h2>
+<div id="introduction" class="section level2 unnumbered">
+<h2>Introduction</h2>
 <p>The Ocean Health Index <span class="citation">(Halpern et al., 2012; Selig et al., 2013)</span> derives most of its pressures from Halpern et al. <span class="citation">(2008)</span>.</p>
 </div>
+<div id="food-provision-fisheries" class="section level2">
+<h2><span class="header-section-number">0.1</span> Food Provision: Fisheries</h2>
+<p>Amount of sustainable wild-caught seafood compared to the max sustainable</p>
+<p><span class="math">\[
+x_{FIS} =  (\prod_{g=1}^{6} SS_{i,g}^{C_{i,g}})^\frac{1}{\sum{C_{i,g}}}
+\]</span></p>
+<p>Variables:</p>
+<ul>
+<li><span class="math">\(SS\)</span>: stock status score, based on B/Bmsy and an underharvest penalty adjustment</li>
+<li><span class="math">\(C\)</span>: total catch</li>
+<li><span class="math">\(i\)</span>: OHI reporting region</li>
+<li><span class="math">\(g\)</span>: level of taxonomic grouping (ISSCAAP)</small></li>
+</ul>
+</div>
 <div id="default-rmarkdown" class="section level2">
 <h2><span class="header-section-number">0.2</span> Default Rmarkdown</h2>
 <p>This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see <a href="http://rmarkdown.rstudio.com">http://rmarkdown.rstudio.com</a>.</p>
