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MGCAT

This code implements the model proposed in the paper "Multi-view graph neural network with cascaded attention for lncRNA-miRNA interaction prediction " (accepted by Knowledge-Based Systems).

Requirements

Please make sure that all the following packages are successfully installed:

  • pytorch==1.10.2
  • torch_geometric==2.0.3
  • pandas==1.3.5
  • numpy== 1.22.2
  • scikit-learn==1.0.2

To get the environment resolved quickly, run:

cd code/
pip install -r requirements.txt

Usage

Please download code and data, then execute the following command:

cd code/
python main.py

Citation

If it helps you, please kindly cite this paper:

@article{li2023multi,
  title={Multi-view graph neural network with cascaded attention for lncRNA-miRNA interaction prediction},
  author={Li, Hui and Wu, Bin and Sun, Miaomiao and Ye, Yangdong and Zhu, Zhenfeng and Chen, Kuisheng},
  journal={Knowledge-Based Systems},
  volume={268},
  pages={110492},
  year={2023},
  publisher={Elsevier}
}

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