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optimize EvaluationSet.update_domain_keyed_dicts

Status: Open.

Feature

#277 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on Mar 25, 2026

design DNA strand displacement rate constants

Status: Open.

#273 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on Aug 29, 2025

restart should require output directory to be specified explicitly

invalidThis doesn't seem rightThis doesn't seem right

Status: Open.

#272 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on Jul 22, 2025

storable constraints

Status: Open.

#271 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on May 23, 2025

rna_duplex_multiple being called with wrong signature

Status: Open.

#269 In UC-Davis-molecular-computing/nuad;

· JoshPetrack opened on Jan 31, 2025

use hidden thresholds to speed up convergence

enhancementNew feature or requestNew feature or request

Status: Open.

#268 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on Jan 14, 2025

fix failing unit tests due to ViennaRNA installation failing on CI server

invalidThis doesn't seem rightThis doesn't seem right

Status: Open.

#266 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on Jan 6, 2025

use ruff CI

Status: Open.

#261 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on Dec 27, 2024

remove strand groups

invalidThis doesn't seem rightThis doesn't seem right

Status: Open.

#258 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on Apr 17, 2024

merge Result and Evaluation

Status: Open.

#254 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on Mar 26, 2024

allow subdomains to have multiple parents

enhancementNew feature or requestNew feature or request

Status: Open.

#252 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on Dec 15, 2023

generalized dependent domains

enhancementNew feature or requestNew feature or request

Status: Open.

#251 In UC-Davis-molecular-computing/nuad;

· dave-doty opened on Dec 15, 2023