The goal of {rsra} is to query download information for SRA accession list and download them with wget.

wget is required in your system.

You can install this package with:

remotes::install_github("ShixiangWang/rsra")

Function signature:

> args(rsra)
function (idList, outdir = getwd(), progress = FALSE, location = c("NCBI", 
    "AWS"))

The first argument can be file(s) storing accession list in each line.

library(rsra)
rsra("SRR8615934")

Rscript -e 'rsra::rsra("SRR8615934")'

• get-ena-seq

• ffq - A tool to find sequencing data and metadata from public databases

GPL-3