Dear Shixiang,
thank you very much for creating a useful wrapper to run Absolute. However, I found there may be a problem on colunm "genome doubling" in the final table file. For instance, all the results are 0 in TCGA-LIHC cohort, which menas that there is no genome doubling in this cohort. In fact, it's not ture. Also, from original ABSOLUTE result, we can see nearly 30% of tumor have whole genome doubling. I am not sure if there are some problems when you adapted ABSOLUTE.

best regards,
Long PAN