This example uses the configuration files in the conf directory, and requires starting from the parent SciGraph directory

To test a different ontology edit the ontologies field in the load-configuration.yaml

From this directory:

cd ..

docker build -t scigraph -f docker/Dockerfile .

Building the graph in /tmp/graph, note that this will error if another graph exists in this directory,

docker run \
    -v /tmp/graph:/data \
    -v `pwd`/docker/conf:/scigraph/conf \
    scigraph load-scigraph load-configuration.yaml

docker run \
    -v /tmp/graph:/data \
    -v `pwd`/docker/conf:/scigraph/conf \
    -d -p 9000:9000 \
    --name scigraph-services \
    scigraph start-scigraph-service service-configuration.yaml

Wait 60 seconds for the server to start, then:

Browse the generated REST documentation to see some of the other resources.

Check out some of the REST endpoints:

• Get autocomplete candidates for a prefix

• Find a class based on an "exactish" term match

• Get the graph neighborhood of a class

In the /etc/rc.local

Xvfb :1 -screen 0 800x600x16 &

and in the /etc/environment

export DISPLAY=:1

• Visualize the graph neighborhood of a class

• Visualize a custom, domain specific Cypher query

docker stop scigraph-services