GitHub - Oshlack/MINTIE: Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

MINTIE is a tool for identifying novel, rare cryptic variants in cancer RNA-seq data. Please see the wiki for installation and running instructions.

Name		Name	Last commit message	Last commit date
Latest commit History 485 Commits
DE		DE
annotate		annotate
collate		collate
img		img
simu		simu
test		test
util		util
.gitignore		.gitignore
.travis.yml		.travis.yml
LICENSE		LICENSE
MINTIE.groovy		MINTIE.groovy
MINTIE_SE.groovy		MINTIE_SE.groovy
README.md		README.md
bpipe.config		bpipe.config
install_R_dependencies.R		install_R_dependencies.R
install_linux64.sh		install_linux64.sh
mintie		mintie
params.txt		params.txt
requirements.txt		requirements.txt
setup_references_hg38.sh		setup_references_hg38.sh
tools.groovy		tools.groovy

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