• Describe the issue or question:

When I ran LFQ-MBR workflow with slight modification in FragPipe 21, it showed the following error and exited before finishing.

Exception in thread "main" java.lang.NumberFormatException: For input string: "0,2876"
at java.base/jdk.internal.math.FloatingDecimal.readJavaFormatString(Unknown Source)
at java.base/jdk.internal.math.FloatingDecimal.parseFloat(Unknown Source)
at java.base/java.lang.Float.parseFloat(Unknown Source)
at com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML.percolatorToPepXML(PercolatorOutputToPepXML.java:340)
at com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML.main(PercolatorOutputToPepXML.java:59)
Process 'Percolator: Convert to pepxml' finished, exit code: 1
Process returned non-zero exit code, stopping
Cancelling 76 remaining tasks

The same files and settings worked fine with FragPipe 20.

• Upload your log file
  (If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the zipped file by drag & drop here.)
  log_2023-12-18_12-36-00_FragPipe20.zip
  log_2023-12-20_13-30-35_FragPipe21.zip