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task_schemas.yml
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2133 lines (2099 loc) · 63.5 KB
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- name: get_model_texture
outputs:
- ODF
inputs:
- crystal_symmetry
- specimen_symmetry
methods:
- name: unimodal
inputs:
- modal_orientation_hkl
- modal_orientation_uvw
- halfwidth
implementations:
- name: mtex
commands:
- command: <<executable>>
options:
- [crystal_symmetry]
- [specimen_symmetry]
- [modal_orientation_hkl]
- [modal_orientation_uvw]
- [halfwidth]
output_map:
- files:
- name: ODF.txt
save: true
options:
- name: orientation_coordinate_system
default: null
output: ODF
- name: fibre
inputs:
- halfwidth
implementations:
- name: mtex
commands:
- command: <<executable>>
options:
- [crystal_symmetry]
- [specimen_symmetry]
- [halfwidth]
output_map:
- files:
- name: ODF.txt
save: true
options:
- name: orientation_coordinate_system
default: null
output: ODF
- name: random
inputs:
- num_orientations
implementations:
- name: mtex
commands:
- command: <<executable>>
options:
- [crystal_symmetry]
- [specimen_symmetry]
- [num_orientations]
output_map:
- files:
- name: ODF.txt
save: true
options:
- name: orientation_coordinate_system
default: null
output: ODF
- name: estimate_ODF
outputs:
- ODF
inputs:
- specimen_symmetry
- phase
methods:
- name: from_CTF_file
inputs:
- CTF_file_path[file=True]
implementations:
- name: mtex
commands:
- command: <<executable>>
options:
- [CTF_file_path]
- [specimen_symmetry]
- [phase]
output_map:
- files:
- name: ODF.txt
save: true
options:
- name: orientation_coordinate_system
default: null
output: ODF
- name: from_CRC_file
inputs:
- CRC_file_path[file=True]
- CPR_file_path[file=True]
implementations:
- name: mtex
commands:
- command: <<executable>>
options:
- [CRC_file_path]
- [specimen_symmetry]
- [phase]
output_map:
- files:
- name: ODF.txt
save: true
options:
- name: orientation_coordinate_system
default: null
output: ODF
- name: sample_texture
inputs:
- num_orientations
outputs:
- orientations
methods:
- name: from_ODF
inputs:
- ODF
implementations:
- name: mtex
inputs:
- crystal_symmetry
- specimen_symmetry
input_map:
- inputs:
- ODF
file: ODF.txt
- inputs:
- ODF
file: orientation_coordinate_system.json
commands:
- command: <<executable>>
options:
- [crystal_symmetry]
- [specimen_symmetry]
- [num_orientations]
output_map:
- files:
- name: orientations.txt
save: true
- name: orientation_coordinate_system.json
save: true
output: orientations
- name: from_model_ODF
inputs:
- ODF_components
- crystal_symmetry
- specimen_symmetry
implementations:
- name: mtex
input_map:
- inputs:
- ODF_components
file: ODF_components.json
commands:
- command: <<executable>>
options:
- [ODF_components.json]
- [crystal_symmetry]
- [specimen_symmetry]
- [num_orientations]
output_map:
- files:
- name: orientations.json
save: true
options:
- name: orientation_coordinate_system
default: null
output: orientations
- name: from_CTF_file
inputs:
- CTF_file_path[file=True,save=True]
- specimen_symmetry
- phase
- name: reference_frame_transformation
default: euler_to_spatial # or "spatial_to_euler" or null
- name: rotation # dict with keys "euler_angles_deg" list optional "keep_XY" bool, or "keep_euler" bool
default: null
implementations:
- name: mtex
input_map:
- inputs:
- rotation
file: rotation.json
commands:
- command: <<executable>>
options:
- [CTF_file_path]
- [reference_frame_transformation]
- [specimen_symmetry]
- [phase]
- [rotation.json]
- [num_orientations]
output_map:
- files:
- name: orientations.json
save: true
options:
- name: orientation_coordinate_system
default: null
output: orientations
- name: from_CRC_file
inputs:
- CRC_file_path[file=True,save=False]
- CPR_file_path[file=True,save=True]
- specimen_symmetry
- phase
- name: reference_frame_transformation
default: euler_to_spatial # or "spatial_to_euler" or null
- name: rotation # dict with keys "euler_angles_deg" list optional "keep_XY" bool, or "keep_euler" bool
default: null
implementations:
- name: mtex
input_map:
- inputs:
- rotation
file: rotation.json
commands:
- command: <<executable>>
options:
- [CRC_file_path]
- [reference_frame_transformation]
- [specimen_symmetry]
- [phase]
- [rotation.json]
- [num_orientations]
output_map:
- files:
- name: orientations.json
save: true
options:
- name: orientation_coordinate_system
default: null
output: orientations
- name: from_random
implementations:
- name: damask
inputs:
- name: orientation_coordinate_system
default: null
ignore_dependency_from: ["generate_microstructure_seeds"]
- name: orientations_use_max_precision
default: false
ignore_dependency_from:
[
"generate_microstructure_seeds",
"generate_volume_element",
"simulate_volume_element_loading",
]
- name: from_ODF_mat
inputs:
- name: ODF_mat_path
file: true
implementations:
- name: mtex
inputs:
- crystal_symmetry
- specimen_symmetry
commands:
- command: <<executable>>
options:
- [ODF_mat_path]
- [crystal_symmetry]
- [specimen_symmetry]
- [num_orientations]
output_map:
- files:
- name: orientations.json
save: true
options:
- name: orientation_coordinate_system
default: null
output: orientations
- name: sample_orientations
inputs:
- num_orientations
outputs:
- orientations
methods:
- name: from_CTF_file
inputs:
- CTF_file_path[file=True,save=True]
- specimen_symmetry
- phase
- name: reference_frame_transformation
default: euler_to_spatial # or "spatial_to_euler" or null
- name: rotation # dict with keys "euler_angles_deg" list optional "keep_XY" bool, or "keep_euler" bool
default: null
implementations:
- name: mtex
input_map:
- inputs:
- rotation
file: rotation.json
commands:
- command: <<executable>>
options:
- [CTF_file_path]
- [reference_frame_transformation]
- [specimen_symmetry]
- [phase]
- [rotation.json]
- [num_orientations]
output_map:
- files:
- name: orientations.json
save: true
options:
- name: orientation_coordinate_system
default: null
output: orientations
- name: from_CRC_file
inputs:
- CRC_file_path[file=True,save=False]
- CPR_file_path[file=True,save=True]
- specimen_symmetry
- phase
- name: reference_frame_transformation
default: euler_to_spatial # or "spatial_to_euler" or null
- name: rotation # dict with keys "euler_angles_deg" list optional "keep_XY" bool, or "keep_euler" bool
default: null
implementations:
- name: mtex
input_map:
- inputs:
- rotation
file: rotation.json
commands:
- command: <<executable>>
options:
- [CRC_file_path]
- [reference_frame_transformation]
- [specimen_symmetry]
- [phase]
- [rotation.json]
- [num_orientations]
output_map:
- files:
- name: orientations.json
save: true
options:
- name: orientation_coordinate_system
default: null
output: orientations
- name: generate_microstructure_seeds
outputs:
- microstructure_seeds
methods:
- name: random
inputs:
- size
- num_grains
implementations:
- name: damask
inputs:
- name: phase_label # specify either `phase_label` or `phase_labels`
default: null
- name: phase_labels # specify either `phase_label` or `phase_labels`
default: null
- name: phase_fractions
default: null
- name: grid_size
default: null
ignore_dependency_from: ["generate_volume_element"]
- name: RNG_seed
default: null
- name: orientation_coordinate_system
default: null
ignore_dependency_from:
["sample_texture", "visualise_volume_element_response"]
- name: orientations_use_max_precision
default: false
ignore_dependency_from:
[
"generate_volume_element",
"sample_texture",
"simulate_volume_element_loading",
]
outputs:
- microstructure_seeds
- name: load_microstructure
outputs:
- microstructure_image
methods:
- name: EBSD+DIC
inputs:
- DIC
- EBSD
- name: transform_type
default: affine
- root_path
- name: scaling_factor
default: 1
- name: find_grains_algorithm
default: warp
implementations:
- name: DefDAP
input_map:
- inputs:
- DIC
- EBSD
- transform_type
- root_path
- scaling_factor
- find_grains_algorithm
file: inputs.hdf5
save: false
commands:
- command: <<executable>> inputs.hdf5
output_map:
- files:
- name: outputs.hdf5
save: false
output: microstructure_image
- name: EBSD
inputs:
- EBSD
- root_path
- name: scaling_factor
default: 1
implementations:
- name: DefDAP
input_map:
- inputs:
- EBSD
- root_path
- scaling_factor
file: inputs.hdf5
save: false
commands:
- command: <<executable>> inputs.hdf5
output_map:
- files:
- name: outputs.hdf5
save: false
output: microstructure_image
- name: generate_volume_element
outputs:
- volume_element
methods:
- name: single_voxel_grains
implementations:
- name: damask
inputs:
- name: grid_size
- name: size
- name: homog_label
- name: phase_label
- name: orientations
- name: scale_morphology
default: null
- name: scale_update_size
default: true
- name: buffer_phase_size
default: null
- name: buffer_phase_label
default: null
- name: orientations_use_max_precision
default: false
ignore_dependency_from:
[
"generate_microstructure_seeds",
"sample_texture",
"simulate_volume_element_loading",
]
- name: particle_RVE
implementations:
- name: damask
inputs:
- name: microstructure_seeds
- name: grid_size
- name: homog_label
- name: particle_distributions
- name: particles
- name: dual_phase_ti_alpha_colony
implementations:
- name: damask
inputs:
- name: grid_size
- name: alpha_particle_axes_ratio # e.g. x-y-z dimension ratio: [4, 2, 1]
- name: alpha_particle_centres # list of (list of length three) of length equal to number of alpha particles
- name: alpha_orientation # orientation of all alpha particles
- name: beta_orientation # orientation of single beta matrix
- name: from_damask_input_files
inputs:
- name: geom_path
file: true
- name: material_path
file: true
- name: orientations
default: null
implementations:
- name: damask
- name: from_dream3d_pipeline
inputs:
- name: pipeline_path
file: true
implementations:
- name: Dream3D
- name: extrusion
inputs:
- microstructure_image
- depth
- image_axes
- name: phase_label
default: null
- name: phase_label_mapping
default: null
- homog_label
implementations:
- name: damask
- name: from_statistics
implementations:
- name: Dream3D
inputs:
- grid_size
- name: resolution # specify either resolution or size
default: null
- name: size # specify either resolution or size
default: null
- name: origin
default: null
- name: periodic
default: true
- name: phase_statistics
- name: orientations
default: null
- name: precipitates
default: null
input_map:
- inputs:
- precipitates
file: precipitates.txt
- inputs:
- grid_size
- resolution
- size
- origin
- periodic
- phase_statistics
- orientations
- precipitates
file: pipeline.json
output_map:
- output: volume_element
files:
- name: pipeline.dream3d
save: false
commands:
- command: <<executable>>
options:
- [-p, "`pwd`/pipeline.json"] # seems to require absolute path!
stderr: stderr.log
stdout: stdout.log
- name: from_statistics_dual_phase_orientations
implementations:
- name: Dream3D
inputs:
- grid_size
- name: resolution # specify either resolution or size
default: null
- name: size # specify either resolution or size
default: null
- name: origin
default: null
- name: periodic
default: true
- name: phase_statistics
- name: orientations
context: phase_1
alias: orientations_phase_1
- name: orientations
context: phase_2
alias: orientations_phase_2
- name: precipitates
default: null
input_map:
- inputs:
- precipitates
file: precipitates.txt
- inputs:
- grid_size
- resolution
- size
- origin
- periodic
- phase_statistics
- precipitates
file: pipeline.json
output_map:
- output: volume_element
inputs:
- name: phase_statistics # so we know which order the phases are in
- name: orientations_phase_1
- name: orientations_phase_2
options:
- name: RNG_seed
default: null
files:
- name: pipeline.dream3d
save: false
commands:
- command: <<executable>>
options:
- [-p, "`pwd`/pipeline.json"] # seems to require absolute path!
stderr: stderr.log
stdout: stdout.log
- name: random_voronoi
notes: >
In this method we use the random orientations that already exist in
microstructure_seeds (using DAMASK Python package functions).
implementations:
- name: damask
inputs:
- name: microstructure_seeds
- name: grid_size
- name: homog_label
- name: scale_morphology
default: null
- name: scale_update_size
default: true
- name: buffer_phase_size
default: null
- name: buffer_phase_label
default: null
- name: orientations_use_max_precision
default: false
ignore_dependency_from:
[
"generate_microstructure_seeds",
"sample_texture",
"simulate_volume_element_loading",
]
- name: periodic
default: true
- name: neper
inputs:
- name: num_grains
- name: grid_size
- name: buffer_phase_size
default: null
commands:
- command: <<executable>> -T
options:
- [-n, num_grains]
- [-format, tesr]
- [-tesrformat, ascii]
- [-tesrsize, grid_size]
- [-o, volume_element.tesr]
- [-oridescriptor, "euler-bunge:passive"]
- [-periodicity, all]
- command: <<executable>> -T
options:
- [-n, num_grains]
- [-format, tesr]
- [-tesrformat, ascii]
- [-tesrsize, grid_size]
- [-o, volume_element.tesr]
- [-oridescriptor, "euler-bunge:passive"]
- [-periodicity, all]
- [-transform, buffer_phase_size]
command_pathways:
- commands_idx: [0]
- commands_idx: [1]
condition: [buffer_phase_size]
output_map:
- output: volume_element
files:
- name: volume_element.tesr
save: true
options:
- homog_label
- phase_label
- buffer_phase_label
- name: random_voronoi_from_orientations
notes: >
In this method we replace the orientations in microstructure_seeds
with orientations computed from a previous task (using DAMASK Python package
functions).
inputs:
- name: microstructure_seeds
- name: grid_size
- name: homog_label
- name: orientations
- name: scale_morphology
default: null
- name: scale_update_size
default: true
- name: buffer_phase_size
default: null
- name: buffer_phase_label
default: null
- name: orientations_use_max_precision
default: false
ignore_dependency_from:
[
"generate_microstructure_seeds",
"sample_texture",
"simulate_volume_element_loading",
]
- name: periodic
default: true
implementations:
- name: damask
- name: random_voronoi_from_dual_phase_orientations
notes: >
In this method we replace the orientations in microstructure_seeds
with two sets of orientations computed from previous tasks. There must be two
phase labels defined in `microstructure_seeds`.
inputs:
- name: microstructure_seeds
- name: grid_size
- name: homog_label
- name: orientations
context: phase_1
alias: orientations_phase_1
- name: orientations
context: phase_2
alias: orientations_phase_2
- name: scale_morphology
default: null
- name: scale_update_size
default: true
- name: buffer_phase_size
default: null
- name: buffer_phase_label
default: null
- name: orientations_use_max_precision
default: false
ignore_dependency_from:
[
"generate_microstructure_seeds",
"sample_texture",
"simulate_volume_element_loading",
]
- name: RNG_seed
default: null
- name: periodic
default: true
implementations:
- name: damask
- name: modify_volume_element
inputs:
- volume_element
outputs:
- volume_element
methods:
- name: add_buffer_zones
inputs:
- buffer_sizes # size of buffer on each face [-x, +x, -y, +y, -z, +z]
- phase_ids # phase of each buffer. Relative so 1 is the first new phase and so on
- phase_labels # labels of the new phases
- homog_label # label of the homog type
- name: order # order to add the zones, default [x, y, z]
default: null
implementations:
- name: damask
- name: new_orientations
inputs:
- volume_element_response
implementations:
- name: damask
- name: geometry
inputs:
- volume_element_response
implementations:
- name: damask
- name: spread_orientations
inputs:
- phases
- stddev_degrees
implementations:
- name: damask
- name: grid_size
inputs:
- new_grid_size
implementations:
- name: damask
- name: visualise_volume_element
inputs:
- volume_element
methods:
- name: VTK
outputs:
- __file__VTR_file
implementations:
- name: damask
- name: Dream3D
outputs:
- file__Dream3D_file
implementations:
- name: Dream3D
input_map:
- inputs:
- volume_element
file: volume_element.txt
- inputs:
- volume_element
file: pipeline.json
commands:
- command: <<executable>>
options:
- [-p, "`pwd`/pipeline.json"] # seems to require absolute path!
stderr: stderr.log
stdout: stdout.log
- name: visualise_volume_element_response
inputs:
- volume_element_response
- increments
methods:
- name: texture_pole_figure
inputs:
- crystal_symmetries
- pole_figure_directions
- name: phases
default: null # first phase only by default
ignore_dependency_from: ["simulate_volume_element_loading"]
- name: use_contours
default: true
- name: increments # final increment by default
default: null
- name: orientation_coordinate_system
default: null
- name: IPF_reference_direction
default: z
- name: colourbar_limits
default: null
- name: use_one_colourbar
default: False
implementations:
- name: mtex
input_map:
- inputs:
- volume_element_response
- increments
- crystal_symmetries
- phases
- orientation_coordinate_system
file: orientations.json
- inputs:
- colourbar_limits
- use_one_colourbar
file: options.json
commands:
- command: <<executable>>
options:
- [orientations.json]
- [pole_figure_directions]
- [use_contours]
- [IPF_reference_direction]
- [options.json]
- name: texture_odf_section
inputs:
- crystal_symmetries
- pole_figure_directions
- name: phases
default: null # first phase only by default
ignore_dependency_from: ["simulate_volume_element_loading"]
- name: use_contours
default: true
- name: increments # final increment by default
default: null
- name: orientation_coordinate_system
default: null
- name: IPF_reference_direction
default: z
- name: colourbar_limits
default: null
- name: use_one_colourbar
default: False
implementations:
- name: mtex
input_map:
- inputs:
- volume_element_response
- increments
- crystal_symmetries
- phases
- orientation_coordinate_system
file: orientations.json
- inputs:
- colourbar_limits
- use_one_colourbar
file: options.json
commands:
- command: <<executable>>
options:
- [orientations.json]
- [pole_figure_directions]
- [use_contours]
- [IPF_reference_direction]
- [options.json]
- name: generate_load_case
methods:
- name: mixed
implementations:
- name: formable
inputs:
- name:
load_case_specs # list of dict with a `type` which must be another
# `generate_load_case` method (e.g. uniaxial,
# biaxial), and all remaining keys are those expected
# given the specified method.
input_map:
- inputs:
- load_case_specs
file: inputs.hdf5
save: false
commands:
- command: <<executable>> inputs.hdf5
output_map:
- files:
- name: outputs.hdf5
save: false
output: load_case
- name: cyclic_uniaxial
implementations:
- name: formable
inputs:
- name: max_stresses # List of: maximum stress in Pa
- name: min_stresses # List of: minimum stress in Pa
- name: cycle_frequencies # List of: cycle frequencies in Hz
- name: num_increments_per_cycle
- name: num_cycles
- name: directions # List of: a single characters: "x", "y" or "z"
- name: waveforms # List of str: only supported currently is "sine"
default: null
- name: dump_frequency
default: null
input_map:
- inputs:
- max_stresses
- min_stresses
- cycle_frequencies
- num_increments_per_cycle
- num_cycles
- directions
- waveforms
- dump_frequency
file: inputs.hdf5
save: false
commands:
- command: <<executable>> inputs.hdf5
output_map:
- files:
- name: outputs.hdf5
save: false
output: load_case
- name: uniaxial
implementations:
- name: formable
inputs:
- total_times
- num_increments
- name: target_strains
default: null
- name: dump_frequency
default: null
- directions # List of: a single characters: "x", "y" or "z"
- name: target_strain_rates
default: null
- name: rotations
default: null
input_map:
- inputs:
- total_times
- num_increments
- directions
- target_strain_rates
- target_strains
- rotations
- dump_frequency
file: inputs.hdf5
save: false
commands:
- command: <<executable>> inputs.hdf5
output_map:
- files:
- name: outputs.hdf5
save: false
output: load_case
- name: biaxial
implementations:
- name: formable
inputs: