Skip to content

blockedcholesky

Directory actions

More options

Directory actions

More options

Latest commit

 

History

History

blockedcholesky

README.md

Replication Materials for "Mixed-model Log-likelihood Evaluation Via a Blocked Cholesky Factorization"

Steps

  • Install (or update) quarto version 1.7 or greater (v1.6 may work as well, basically use any version of quarto that supports engine: julia)
  • Install jupyter-cache using the instructions from the quarto Julia docs here.
  • Install the JuliaMono font, see instructions at: https://juliamono.netlify.app
  • Install required Julia dependencies by running: 
     $ julia --project=@. -e "import Pkg; Pkg.instantiate()"
  • Generate the JSS formatted preview using: 
     $ make render
  • Generate the arXiv formatted version using: 
    $ make render-arxiv
    Note: this command re-runs the R benchmark script which can take a long time. Note: For the arxiv version, you need to have cbfonts-fd and cbfonts packages installed in your latex distribution
  • If you get errors due to caching, try using the --no-cache option for quarto: 
    quarto render BlockedCholeskyMM.qmd --no-cache                      # for JSS version render
quarto render BlockedCholeskyMM.qmd --no-cache --to arxiv-pdf+arxiv # for arxiv version