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Added support to explore citation relations#7160

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timbachmann wants to merge 118 commits into
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Closed

Added support to explore citation relations#7160
timbachmann wants to merge 118 commits into
JabRef:mainfrom
timbachmann:master

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@timbachmann

@timbachmann timbachmann commented Dec 4, 2020 •
edited by koppor
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Fixes #6187

Added tab in entry editor to explore citation relations of a specific article.
For further information, one can read our project documentation, which is part of this pull request.
This project is part of the "Software Engineering" course at Universität Basel, so don't hesitate to comment or suggest changes.

Screenshots:

Citation Relations Tab

  • Change in CHANGELOG.md described (if applicable)
  • Tests created for changes (if applicable)
  • Manually tested changed features in running JabRef (always required)
  • Screenshots added in PR description (for UI changes)
  • Checked documentation: Is the information available and up to date? If not created an issue at https://github.com/JabRef/user-documentation/issues or, even better, submitted a pull request to the documentation repository.

Marcel Luethi and others added 30 commits September 3, 2020 08:36
disabled github actions
fedf4c5
add clarification to README
c241115
add patterns for emacs temp files
d0551c3
delete all github workflow files
8e265fa
@timbachmann
Created prototype of an Citation Relations Tab displaying an articles…
3da40dd 
… citation relations based on the currently selected BibEntry.

Created prototype for api fetcher of citation relations.
@timbachmann
Added functionality to disable citation relations tab in settings and…
6e88547 
… added language support (german and english) for tab
@timbachmann
Added basic implementation of opencitations api to CitationRelationsTab
411b50f
@timbachmann
Restructured prototype to search in background and implemented basic …
d739bcd 
…title search for all DOI's
@timbachmann
Added custom ListView for CitationRelationsTab and fixed fetching for…
50608a7 
… articles
@timbachmann
Changed ListView cell of CitationRelationsTab to be responsive and ad…
68fb270 
…ded functionality to addButton and detailsButton
@timbachmann
Changed Layout of CitationRelationsTab to display refresh button and …
c6de773 
…labels responsive
@timbachmann
Code cleanup and Documentation for all new methods and classes
1115b92
@timbachmann
added internet connection loss handling
f72a30e
@timbachmann
added InformationDialog when current entry has no DOI to search
400207f
@timbachmann
added label to progress indicator to show detailed progress infos
77021f5
resolve merge conflicts
017e5d9
@timbachmann
Implemented WebSearch into CitationRelationsTab
4000d9b
resolve merge conficts
718fbb5
@timbachmann
Fixed wrong import of Globals
53a12ce
@timbachmann
Added StandardFields CITED and CITEDBY and support for importing slel…
a154b1e 
…ected entries
@timbachmann
Switched Tab Lists
d5e1134
local Globals bugfix
971b47c
Merge branch 'prototype' of github-unibas:RaphaelKreft/jabref into pr…
995f071 
…ototype
Change current dialogpromts to notifications from the bottom
6a9d3c9
switch vboxes
f5d1065
Added new Activation Preference, ActivationPane and distinction in bi…
016503b 
…ndToEntry
style ActivationPane
082a4bf
@timbachmann
added listViews for local search
ab349c0
@timbachmann
support to cancel background task
02e1caa
Added Localization
def7bcf
@koppor

koppor commented Dec 8, 2020

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For auto closing: Fixes #6187

(GitHub does not know Resolved issue for auto closing)

@koppor

koppor commented Dec 8, 2020

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Small note: The commit messages of the new commits are good ones - imperative voice. See https://chris.beams.io/posts/git-commit/#imperative for details

@koppor

koppor commented Dec 21, 2020

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@timbachmann May I ask for the status? I currently don't see where the current working token is located. 😇

@stefan-kolb

stefan-kolb commented Jan 10, 2021

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@timbachmann Amazing feature ❤️

@koppor

koppor commented Jan 10, 2021 •
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Storing references externally

Pro storing "cited by" and "cites" from "external papers" (== not contained in .bib file) into the file

  • .bib file is self contained

Con storing in the file

  • can be retrieved quite easily on another machine
  • bib file pollution

Storing internal references

Internal links within the .bib file:

Pro and con as above

Conclusion

Proposal:

Use a h2 database for storing this information. h2 functionality is already included in JabRef.

NOT chosen:

  • Create a file next to the .bib file with .jabref having meta data of the paper
    • Use YAML as format

Future Work (not part of this PR)

Make a "portable" .car file being self-contained. This is a "citation-archive" containing the external link file and the .bib file. This can be imported by another jabref instance.

@koppor koppor mentioned this pull request Jan 18, 2021
Open
@koppor koppor marked this pull request as draft January 21, 2021 23:27
@koppor koppor mentioned this pull request Mar 1, 2021
Closed
@tobiasdiez tobiasdiez added the status: changes-required Pull requests that are not yet complete label Mar 10, 2021
koppor and others added 4 commits July 28, 2021 22:27
@koppor
Merge remote-tracking branch 'origin/main' into pr-7160
08229f1 
# Conflicts:
#	.mailmap
#	AUTHORS
#	src/main/java/org/jabref/gui/entryeditor/EntryEditor.java
#	src/main/java/org/jabref/gui/entryeditor/OtherFieldsTab.java
#	src/main/resources/l10n/JabRef_de.properties
#	src/main/resources/l10n/JabRef_en.properties
@koppor @calixtus
Compile fix
0821f46 
Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
@koppor
Modernize code, rename CITEDBY to CITED_BY
24bd884
@koppor
Rename CITEDBY to CITED_BY, began to rework code
5637a4f
@koppor koppor self-assigned this Aug 2, 2021
@koppor koppor mentioned this pull request Sep 22, 2021
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@koppor

koppor commented Sep 22, 2021

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@koppor koppor mentioned this pull request Sep 22, 2021
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@koppor koppor mentioned this pull request Aug 13, 2022
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@koppor koppor mentioned this pull request Oct 14, 2022
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@koppor koppor mentioned this pull request Oct 24, 2022
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@koppor koppor mentioned this pull request May 7, 2023
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@koppor

koppor commented May 7, 2023

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We all did not find time to finish this PR. Therefore, moving to koppor - to preserve the commits. See JabRef#643

@koppor koppor closed this May 7, 2023
@HoussemNasri HoussemNasri mentioned this pull request Sep 4, 2023
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@koppor koppor koppor requested changes

@tobiasdiez tobiasdiez tobiasdiez requested changes

@Siedlerchr Siedlerchr Siedlerchr requested changes

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Add posibility to explore citation relations

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@timbachmann @tobiasdiez @koppor @stefan-kolb @Siedlerchr @matiascg @oliviermattmann @RaphaelKreft @ThiloteE