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Exception when importing certain unlinked local files #5815

Closed
#6567
Closed
Exception when importing certain unlinked local files#5815
#6567
Labels
[outdated] type: bugConfirmed bugs or reports that are very likely to be bugscomponent: import-loadgood first issueAn issue intended for project-newcomers. Varies in difficulty.
@0xDBFB7

Description

@0xDBFB7
0xDBFB7
opened on Jan 5, 2020

JabRef version
JabRef 5.0-beta.1--2019-12-15--0b8b1d6
Linux 4.9.0-9-amd64 amd64
Java 13.0.1 on Debian 9

Seems to be related to #5128: a few specific pdf files cause an exception. It's not related to the filename. The misbehaving file in question can be downloaded here.

Steps to reproduce the behavior:

  1. Open "find unlinked files"
  2. Search the folder containing ref_571.pdf or ref_375.pdf
  3. Press import. Other files will import without difficulty, but when 571 is selected the exception will be thrown and the file is not imported.

Thanks! Awesome software, great work.

Log File 

java.lang.StringIndexOutOfBoundsException: begin 0, end -1, length 2073
  at java.base/java.lang.String.checkBoundsBeginEnd(Unknown Source)
  at java.base/java.lang.String.substring(Unknown Source)
  at org.jabref/org.jabref.logic.xmp.XmpUtilReader.getXmpMetadata(Unknown Source)
  at org.jabref/org.jabref.logic.xmp.XmpUtilReader.readXmp(Unknown Source)
  at org.jabref/org.jabref.logic.importer.fileformat.PdfXmpImporter.importDatabase(Unknown Source)
  at org.jabref/org.jabref.logic.externalfiles.ExternalFilesContentImporter.importXMPContent(Unknown Source) at org.jabref/org.jabref.gui.externalfiles.ImportHandler.importAsNewEntries(Unknown Source)
  at org.jabref/org.jabref.gui.externalfiles.FindUnlinkedFilesDialog.startImport(Unknown Source)
  at org.jabref/org.jabref.gui.externalfiles.FindUnlinkedFilesDialog.lambda$initialize$8(Unknown Source)
  at org.jabref.merged.module/javafx.scene.control.Dialog.setResultAndClose(Unknown Source)
  at org.jabref.merged.module/javafx.scene.control.DialogPane.lambda$createButton$3(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
  at org.jabref.merged.module/javafx.event.Event.fireEvent(Unknown Source)
  at org.jabref.merged.module/javafx.scene.Node.fireEvent(Unknown Source)
  at org.jabref.merged.module/javafx.scene.control.Button.fire(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.scene.control.behavior.ButtonBehavior.mouseReleased(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.scene.control.inputmap.InputMap.handle(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
  at org.jabref.merged.module/javafx.event.Event.fireEvent(Unknown Source)
  at org.jabref.merged.module/javafx.scene.Scene$MouseHandler.process(Unknown Source)
  at org.jabref.merged.module/javafx.scene.Scene.processMouseEvent(Unknown Source)
  at org.jabref.merged.module/javafx.scene.Scene$ScenePeerListener.mouseEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
  at java.base/java.security.AccessController.doPrivileged(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.glass.ui.View.handleMouseEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.glass.ui.View.notifyMouse(Unknown Source)
  at org.jabref.merged.module/com.sun.glass.ui.gtk.GtkApplication.enterNestedEventLoopImpl(Native Method)
  at org.jabref.merged.module/com.sun.glass.ui.gtk.GtkApplication._enterNestedEventLoop(Unknown Source)
  at org.jabref.merged.module/com.sun.glass.ui.Application.enterNestedEventLoop(Unknown Source)
  at org.jabref.merged.module/com.sun.glass.ui.EventLoop.enter(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.QuantumToolkit.enterNestedEventLoop(Unknown Source)
  at org.jabref.merged.module/javafx.stage.Stage.showAndWait(Unknown Source)
  at org.jabref.merged.module/javafx.scene.control.HeavyweightDialog.showAndWait(Unknown Source)
  at org.jabref.merged.module/javafx.scene.control.Dialog.showAndWait(Unknown Source)
  at org.jabref/org.jabref.gui.externalfiles.FindUnlinkedFilesAction.execute(Unknown Source)
  at org.jabref/org.jabref.gui.actions.JabRefAction.lambda$new$2(Unknown Source)
  at org.jabref.merged.module/org.controlsfx.control.action.Action.handle(Unknown Source)
  at org.jabref.merged.module/org.controlsfx.control.action.Action.handle(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
  at org.jabref.merged.module/javafx.event.Event.fireEvent(Unknown Source)
  at org.jabref.merged.module/javafx.scene.control.MenuItem.fire(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.scene.control.ContextMenuContent$MenuItemContainer.doSelect(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.scene.control.ContextMenuContent$MenuItemContainer.lambda$createChildren$12(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
  at org.jabref.merged.module/javafx.event.Event.fireEvent(Unknown Source)
  at org.jabref.merged.module/javafx.scene.Scene$MouseHandler.process(Unknown Source)
  at org.jabref.merged.module/javafx.scene.Scene.processMouseEvent(Unknown Source)
  at org.jabref.merged.module/javafx.scene.Scene$ScenePeerListener.mouseEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
  at java.base/java.security.AccessController.doPrivileged(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(Unknown Source)
  at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.glass.ui.View.handleMouseEvent(Unknown Source)
  at org.jabref.merged.module/com.sun.glass.ui.View.notifyMouse(Unknown Source)
  at org.jabref.merged.module/com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
  at org.jabref.merged.module/com.sun.glass.ui.gtk.GtkApplication.lambda$runLoop$11(Unknown Source)
  at java.base/java.lang.Thread.run(Unknown Source)

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    [outdated] type: bugConfirmed bugs or reports that are very likely to be bugscomponent: import-loadgood first issueAn issue intended for project-newcomers. Varies in difficulty.

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