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Library has been modified => Crash #5124

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Library has been modified => Crash#5124
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@j0hannes

Description

@j0hannes
j0hannes
opened on Jul 14, 2019

JabRef version 5.0-dev on Arch

Jabref tells me that "The library has been modified by another program." even if this is not the case. If I choose "Review changes", I see one entry for "Metadata change" and several hundreds of "Added entry". Clicking on "Metadata change" in the list shows "Metadata change" on the right where we usually differences are depicted. Clicking on any of the "Added entry" just gives no description. Accepting the "changes" will immediately lead to a new notification of changes, which, when accepted, give a null pointer exception.

Steps to reproduce the behavior:

  1. use Jabref
  2. problem will eventually occur after waking up from sleep mode or even spontaneously
Exception 
java.lang.NullPointerException
  at javafx.collections.ListChangeBuilder.finalizeSubChange(ListChangeBuilder.java:552)
  at javafx.collections.ListChangeBuilder.finalizeSubChangeArray(ListChangeBuilder.java:546)
  at javafx.collections.ListChangeBuilder.commit(ListChangeBuilder.java:524)
  at javafx.collections.ListChangeBuilder.endChange(ListChangeBuilder.java:541)
  at javafx.collections.ObservableListBase.endChange(ObservableListBase.java:205)
  at javafx.collections.ModifiableObservableListBase.addAll(ModifiableObservableListBase.java:102)
  at javafx.collections.FXCollections$SynchronizedList.addAll(FXCollections.java:1049)
  at org.jabref.model.database.BibDatabase.insertEntries(BibDatabase.java:232)
  at org.jabref.model.database.BibDatabase.insertEntry(BibDatabase.java:206)
  at org.jabref.model.database.BibDatabase.insertEntry(BibDatabase.java:194)
  at org.jabref.gui.collab.EntryAddChangeViewModel.makeChange(EntryAddChangeViewModel.java:25)
  at org.jabref.gui.collab.ChangeDisplayDialog.lambda$new$393(ChangeDisplayDialog.java:58)
  at javafx.scene.control.Dialog.impl_setResultAndClose(Dialog.java:1026)
  at javafx.scene.control.DialogPane.lambda$createButton$3(DialogPane.java:777)
  at com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(CompositeEventHandler.java:218)
  at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:80)
  at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238)
  at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191)
  at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74)
  at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49)
  at javafx.event.Event.fireEvent(Event.java:198)
  at javafx.scene.Node.fireEvent(Node.java:8413)
  at javafx.scene.control.Button.fire(Button.java:185)
  at com.sun.javafx.scene.control.behavior.ButtonBehavior.mouseReleased(ButtonBehavior.java:182)
  at com.sun.javafx.scene.control.skin.BehaviorSkinBase$1.handle(BehaviorSkinBase.java:96)
  at com.sun.javafx.scene.control.skin.BehaviorSkinBase$1.handle(BehaviorSkinBase.java:89)
  at com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(CompositeEventHandler.java:218)
  at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:80)
  at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238)
  at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191)
  at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74)
  at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49)
  at javafx.event.Event.fireEvent(Event.java:198)
  at javafx.scene.Scene$MouseHandler.process(Scene.java:3757)
  at javafx.scene.Scene$MouseHandler.access$1500(Scene.java:3485)
  at javafx.scene.Scene.impl_processMouseEvent(Scene.java:1762)
  at javafx.scene.Scene$ScenePeerListener.mouseEvent(Scene.java:2494)
  at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:394)
  at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:295)
  at java.security.AccessController.doPrivileged(Native Method)
  at com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(GlassViewEventHandler.java:432)
  at com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(QuantumToolkit.java:389)
  at com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(GlassViewEventHandler.java:431)
  at com.sun.glass.ui.View.handleMouseEvent(View.java:555)
  at com.sun.glass.ui.View.notifyMouse(View.java:937)
  at com.sun.glass.ui.gtk.GtkApplication.enterNestedEventLoopImpl(Native Method)
  at com.sun.glass.ui.gtk.GtkApplication._enterNestedEventLoop(GtkApplication.java:211)
  at com.sun.glass.ui.Application.enterNestedEventLoop(Application.java:511)
  at com.sun.glass.ui.EventLoop.enter(EventLoop.java:107)
  at com.sun.javafx.tk.quantum.QuantumToolkit.enterNestedEventLoop(QuantumToolkit.java:590)
  at javafx.stage.Stage.showAndWait(Stage.java:474)
  at javafx.scene.control.HeavyweightDialog.showAndWait(HeavyweightDialog.java:162)
  at javafx.scene.control.Dialog.showAndWait(Dialog.java:341)
  at org.jabref.gui.collab.DatabaseChangePane.lambda$onDatabaseChanged$176(DatabaseChangePane.java:38)
  at org.controlsfx.control.action.Action.handle(Action.java:419)
  at org.controlsfx.control.action.Action.handle(Action.java:64)
  at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:86)
  at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238)
  at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191)
  at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74)
  at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49)
  at javafx.event.Event.fireEvent(Event.java:198)
  at javafx.scene.Node.fireEvent(Node.java:8413)
  at javafx.scene.control.Button.fire(Button.java:185)
  at com.sun.javafx.scene.control.behavior.ButtonBehavior.mouseReleased(ButtonBehavior.java:182)
  at com.sun.javafx.scene.control.skin.BehaviorSkinBase$1.handle(BehaviorSkinBase.java:96)
  at com.sun.javafx.scene.control.skin.BehaviorSkinBase$1.handle(BehaviorSkinBase.java:89)
  at com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(CompositeEventHandler.java:218)
  at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:80)
  at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238)
  at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191)
  at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
  at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
  at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74)
  at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:54)
  at javafx.event.Event.fireEvent(Event.java:198)
  at javafx.scene.Scene$MouseHandler.process(Scene.java:3757)
  at javafx.scene.Scene$MouseHandler.access$1500(Scene.java:3485)
  at javafx.scene.Scene.impl_processMouseEvent(Scene.java:1762)
  at javafx.scene.Scene$ScenePeerListener.mouseEvent(Scene.java:2494)
  at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:394)
  at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:295)
  at java.security.AccessController.doPrivileged(Native Method)
  at com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(GlassViewEventHandler.java:432)
  at com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(QuantumToolkit.java:389)
  at com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(GlassViewEventHandler.java:431)
  at com.sun.glass.ui.View.handleMouseEvent(View.java:555)
  at com.sun.glass.ui.View.notifyMouse(View.java:937)
  at com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
  at com.sun.glass.ui.gtk.GtkApplication.lambda$null$5(GtkApplication.java:139)
  at java.lang.Thread.run(Thread.java:748)

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