-
-
Notifications
You must be signed in to change notification settings - Fork 3.4k
Include PMID in PubMed imports #11488
Copy link
Copy link
Closed
Labels
[outdated] type: bugConfirmed bugs or reports that are very likely to be bugsConfirmed bugs or reports that are very likely to be bugsgood first issueAn issue intended for project-newcomers. Varies in difficulty.An issue intended for project-newcomers. Varies in difficulty.
Metadata
Metadata
Assignees
Labels
[outdated] type: bugConfirmed bugs or reports that are very likely to be bugsConfirmed bugs or reports that are very likely to be bugsgood first issueAn issue intended for project-newcomers. Varies in difficulty.An issue intended for project-newcomers. Varies in difficulty.
Type
Fields
Give feedbackNo fields configured for issues without a type.
Projects
StatusShow more project fields
Done
StatusShow more project fields
Done
The MEDLINE importer does not include PubMed IDs (PMID) when importing from PubMed text files.
This is problematic for two reasons:
PubMed records also have an NLM unique identifier that JabRef imports, but this is not the same as the PMID and does not substitute for it. MEDLINE records produced by sources other than PubMed tend to include the PMID and not the NLM identifier, so the PMID is more useful for merging and deduplicating entries in JabRef. The PMID can also be used to visit the record on PubMed, fetch additional data, and so on.
The MEDLINE importer should include the
PMIDelement from pubmed/medline files.See MEDLINE/PubMed Data Element (Field) Descriptions for information about the elements included in PubMed text files.