This version has a new, simplified command-line interface, which should make Slacken easier to use.

It also includes general performance improvements and a draft API interface for programmatically classifying reads or samples from a Spark session.

Compiled for Java 8/11/17, Spark 3.5, and Scala 2.12.

Re-release of v1.1.0 for archiving at Zenodo.

Compiled for Scala 2.12, Spark 3.5, and Java 8/11/17.

• Added --detailed and --nodetailed switch, for controlling per-read output. With --nodetailed, only reports will be written and Slacken will classify inputs faster.
• Clarified CLI help and comments.
• Better test coverage, including scalacheck properties for classification and input format parsers.
• Bugfix for a case where newlines in short fasta sequences were not handled correctly.
• If the command line options can't be correctly parsed, do not exit using System.exit, since this is bad practice in a Spark cluster. Instead, just return from the main function.
• Code style and quality cleanups.
• More efficient Spark SQL, improving overall efficiency.

Compiled for Scala 2.12, Spark 3.5, and Java 8/11/17.