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gtf option, fastdataprep, and dataprep intermediate file removal#48

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ploy-np merged 54 commits intoGoekeLab:masterfrom
yuukiiwa:gtf
Feb 9, 2021
Merged

gtf option, fastdataprep, and dataprep intermediate file removal#48
ploy-np merged 54 commits intoGoekeLab:masterfrom
yuukiiwa:gtf

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@yuukiiwa yuukiiwa commented Feb 2, 2021

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ploy-np and others added 23 commits November 21, 2020 05:36
add gtf option to fastdataprep
To do: Need to figure out a way of adding the ensembl argument without changing the Consumer class at helper.py
from "p_overlap, list_cdf_at_intersections = stats.calc_prob_overlapping(mu, sigma2)" in io.py
the eventalign.need file is the combination of the eventalign.index and the eventalign.combine file
can rename eventalign.need later
-also getting rid of eventalign.log for now
-need to optimize the generation of eventalign.index
-pandas.to_string in the previous commit is really slow
@ploy-np ploy-np merged commit 4fa705c into GoekeLab:master Feb 9, 2021
@yuukiiwa yuukiiwa deleted the gtf branch September 20, 2021 07:22
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2 participants