gtf option, fastdataprep, and dataprep intermediate file removal#48
Merged
ploy-np merged 54 commits intoGoekeLab:masterfrom Feb 9, 2021
Merged
gtf option, fastdataprep, and dataprep intermediate file removal#48ploy-np merged 54 commits intoGoekeLab:masterfrom
ploy-np merged 54 commits intoGoekeLab:masterfrom
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update fastdataprep
add gtf option to fastdataprep
To do: Need to figure out a way of adding the ensembl argument without changing the Consumer class at helper.py
from "p_overlap, list_cdf_at_intersections = stats.calc_prob_overlapping(mu, sigma2)" in io.py
the eventalign.need file is the combination of the eventalign.index and the eventalign.combine file can rename eventalign.need later
-also getting rid of eventalign.log for now -need to optimize the generation of eventalign.index
-pandas.to_string in the previous commit is really slow
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